2020 Publications

Publications from our faculty and fellows during their time at WID are listed below. Please see each publication for additional information.

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Year	Title	Author(s)	Type
2020	A comparative analysis of 3D user interaction: how to move virtual objects in mixed reality	Hyo Jeong Kang, Jung-hye Shin, Kevin Ponto	Proceeding
2020	A comprehensive analysis comparing linear and generalized linear models in detecting adaptive SNPs	Lan Luo, Zheng-zheng Tang, Sean D. Schoville, Jun Zhu	Article
2020	A line-search descent algorithm for strict saddle functions with complexity guarantees	Michael O'Neill, Stephen J. Wright	Preprint
2020	A pH-responsive silica-metal-organic framework hybrid nanoparticle for the delivery of hydrophilic drugs, nucleic acids, and CRISPR-Cas9 genome-editing machineries	Yuyuan Wang, Pawan K. Shahi, Ruosen Xie, Huilong Zhang, Amr A.Abdeen, Nisakorn Yodsanit, Zhenqiang Ma, Krishanu Saha, Bikash R. Pattnaik, Shaoqin Gong	Article
2020	A self-powered and arch-structured triboelectric nanogenerator for portable electronics and human-machine communication	Xingxing Shi, Shuidong Zhang, Shaoqin Gong	Article
2020	A sociotechnical systems approach toward tailored design for personal health information management	Nicole E. Werner, Michelle Tong, Dan Nathan-Roberts, Catherine Arnott-Smith, Ross Tredinnick, Kevin Ponto, Marijke Melles, Peter Hoonakker	Article
2020	Adapting LIGO workflows to run in the Open Science Grid	Edgar Fajardoa, Frank Wuerthweina, Brian Bockelmanb, Miron Livny, Greg Thain, James Alexander Clark, Peter Couvares, Josh Willis	Preprint
2020	Aligned human cardiac syncytium for in vitro analysis of electrical, structural, and mechanical readouts	B.N. Napiwocki, D. Lang, A. Stempien, J. Zhang, R. Vaidyanathan, J.C. Makielski, L.L. Eckhardt, A.V. Glukhov, T.J. Kamp, W.C. Crone	Article
2020	An ecological framework for the analysis of prebiotic chemical reaction networks	Zhen Peng, Alex M. Plum, Praful Gagrani, David A. Baum	Article
2020	An inferred fitness consequence map of the rice genome	Zoé Joly-Lopez, Adrian E. Platts, Brad Gulko, Jae Young Choi, Simon C. Groen, Xuehua Zhong, Adam Siepel, Michael D. Purugganan	Article
2020	Analysis of biased stochastic gradient descent using sequential semidefinite programs	Bin Hu, Peter Seiler, Laurent Lessard	Technical Report
2020	Application of quantum machine learning using the quantum variational classifier method to high energy physics analysis at the LHC on IBM quantum computer simulator and hardware withn10 qubits	Sau Lan Wu, Jay Chan, Wen Guan, Shaojun Sun, Alex Wang, Chen Zhou, Miron Livny, Federico Carminati, Alberto Di Meglio, Andy C. Y. Li, Joseph Lykken, Panagiotis Spentzouris, Samuel Yen-Chi Chen, Shinjae Yoo, Tzu-Chieh Wei	Preprint
2020	Approximating the lagrangian dual of a stochastic integer program via fenchel cuts	Rui Chen, James Luedtke	Preprint
2020	Axial-circular magnetic levitation: a three-dimensional density measurement and manipulation approach	Chengqian Zhang, Peng Zhao, Fu Gu, Xuechun Zhang, Jun Xie, Yong He, Huamin Zhou, Jianzhong Fu, Lih-Sheng Turng	Article
2020	Beta cell dedifferentiation induced by IRE1α deletion prevents type 1 diabetes	Hugo Lee, Yong-Syu Lee, Quincy Harenda, Stefan Pietrzak, Hülya Zeynep Oktay, Sierra Schreiber, Yian Liao, Shreyash Sonthalia, Ashley E. Ciecko, Yi-Guang Chen, Sunduz Keles, Rupa Sridharan, Feyza Engin	Article
2020	Bioengineering tissue morphogenesis and function in human neural organoids	Nikolai J. Fedorchak, Nisha Iyer, Randolph S. Ashton	Article
2020	Biological and catalytic functions of sirtuin 6 as targets for small-molecule modulators	Mark A. Klein, John M. Denu	Article
2020	Biologically functionalized expanded polytetrafluoroethylene blood vessel grafts	Dongfang Wang, Yiyang Xu, Yu-Jyun Lin, Galip Yilmaz, Jue Zhang, George Schmidt, Qian Li, James A. Thomson, Lih-Sheng Turng	Article
2020	Biomimetic fibrin-targeted and H2O2-responsive nanocarriers for thrombus therapy	Yi Zhao, Ruosen Xie, Nisakorn Yodsanit, Mingzhou Ye, Yuyuan Wang, Shaoqin Gong	Article
2020	Blue hues don't bring the blues: questioning conventional notions of color-emotion associations	Karen B. Schloss, Christoph Witzel, Leslie Y. Lai	Article
2020	Breakup of a viscoelastic droplet in co-rotating non-twin screw channels	Huiwen Yu, Baiping Xu, Hongwu Wu, Yaoxue Du, Chuntai Liu, Lih-Sheng Turng	Article
2020	BREWing better broader impacts	Anne Lynn Gillian-Daniel, Matthew D. Stilwell, Nicholas L. Abbott, Wendy C. Crone	Technical Report
2020	Can indicator species guide conservation investments to restore connectivity in Great Lakes tributaries?	Kimberly B. Fitzpatrick, Allison T. Moody, Austin Milt, Matthew E. Herbert, Mary Khoury, Eugene Yacobson, Jared A. Ross, Patrick J. Doran, Michael C. Ferris, Peter B. McIntyre, Thomas M. Neeson	Article
2020	Characterization of polymer materials using magnetic levitation	Jun Xie, Peng Zhao, Jianfeng Zhang, Hongwei Zhou, Jianzhong Fu, Lih-Sheng Turng	Article
2020	Classification of T-cell activation via autofluorescence lifetime imaging	Alex J. Walsh, Katherine P. Mueller, Kelsey Tweed, Isabel Jones, Christine M. Walsh, Nicole J. Piscopo, Natalie M. Niemi, David J. Pagliarini, Krishanu Saha, Melissa C. Skala	Article
2020	Complexity, exactness, and rationality in polynomial optimization	Daniel Bienstock, Alberto Del Pia, Robert Hildebrand	Preprint
2020	Constitutionalism at the nexus of life and law	J. Benjamin Hurlbut, Sheila Jasanoff, Krishanu Saha	Article
2020	Consumer Health Literacy, the National Library of Medicine, and the Public Library: Bridging the Gaps	Catherine Arnott-Smith, Alla Keselman, Amanda J. Wilson, M. Nichelle Midón	Article
2020	Crosslinked polymer nanocapsules for therapeutic, diagnostic, and theranostic applications	Haotian Sun, William Erdman III, Yuan Yuan, Mohamed Alaa Mohamed, Ruosen Xie, Yuyuan Wang, Shaoqin Gong, Chong Cheng	Article
2020	Data-driven sample average approximation with covariate information	Rohit Kannan, Güzin Bayraksan, James R. Luedtke	Article
2020	Design of efficacious somatic cell genome editing strategies for recessive and polygenic diseases	Jared Carlson-Stevermer, Amritava Das, Amr A. Abdeen, David Fiflis, Benjamin Isaac Grindel, Tugce Akcan, Tausif Alam, Heidi Kletzein, Lucille Kohlenberg, Madelyn Goedland, Micah J. Dombroe, Krishanu Saha	Preprint
2020	Effect of carbonization temperature on mechanical properties and biocompatibility of biochar/ultra-high molecular weight polyethylene composites	Suiyi Li, Yiyang Xu, Xin Jing, Galip Yilmaz, Dagang Li, Lih-Sheng Turng	Article
2020	Ethanol-lubricated expanded-polytetrafluoroethylene vascular grafts loaded with eggshell membrane extract and heparin for rapid endothelialization and anticoagulation	Shujie Yan, Yiyang Xu, Yu-JyunLin, Zhi Zhang, Xiang Zhang, Galip Yilmaz, Qian Li, Lih-Sheng Turng	Article
2020	Expanded poly(tetrafluoroethylene) blood vessel grafts with embedded Reactive Oxygen Species (ROS)-responsive antithrombogenic drug for elimination of thrombosis	Dongfang Wang, Yiyang Xu, Lixia Wang, Xiofeng Wang, Cuihong Ren, Bo Zhang, Qian Li, James A. Thomson, Lih-Sheng Turng	Article
2020	Expanded polytetrafluoroethylene/graphite composites for easy water/oil separation	Ryan Aturaliya, Dongfang Wang, Yi-Yang Xu, Yu-Jyun Lin, Qian Li, Lih-Sheng Turng	Article
2020	Exploiting network restricted compute resources with HTCondor: a CMS experiment experience	Carles Acosta-Silva , Antonio Delgado Peris , José Flix Molina, Jaime Frey , José M. Hernández, Miron Livny, Antonio Pérez-Calero Yzquierdo, Todd Tannenbaum	Article
2020	Exploring the universe from Antarctica - an informal STEM polar research exhibit	Ross Tredinnick, Rebecca Cors, James Madsen, David Gagnon, Silvia Bravo-Gallart, Bryce Sprecher, Kevin Ponto	Article
2020	F?box protein CFK1 interacts with and degrades de novo DNA methyltransferase in Arabidopsis	Jiani Chen, Jie Liu, Jianjun Jiang, Shuiming Qian, Jingwen Song, Rachel Kabara, Isabel Delo, Giovanna Serino, Fengquan Liu, Zhihua Hua, Xuehua Zhong	Article
2020	FEM of gas-assisted injection molding mased on 3D model	Xinchao Wang, Tie Geng, Liqun Yan, Yonggang Guo, Lih-Sheng Turng	Article
2020	Finding all ε-good arms in stochastic bandits	Blake Mason, Lalit Jain, Ardhendu Tripathy, Robert Nowak	Preprint
2020	Flexible and stretchable moicrowave electronics: past, present, and future perspective	Huilong Zhang, Yu Lan, Shuoyang Qiu, Seunghwan Min, Hokyung Jang, Jeongpil Park, Shaoqin Gong, Zhenqiang Ma	Article
2020	Fluid-Powered projectile-assisted injection molding: principles and developments	T.-Q. Kuang, T. Liu, Q. Feng, W.-W Liu, H.-S. Liu, L.-S. Turng	Article
2020	Functionalization of 3-D porous thermoplastic polyurethane scaffolds by two-stage polydopamine/hydroxyapatite composite nanoparticles	Z. X. Cui, S. Shen, J. H. Wu, J. H. Si, Q. T. Wang, L-S. Turng, W. Z. Chen	Article
2020	Generalized Chernoff sampling for active learning and structured bandit algorithms	Subhojyoti Mukherjee, Ardhendu Tripathy, Robert Nowak	Preprint
2020	Genome editing with precision and accuracy	Krishanu Saha	Book
2020	Genome engineering of induced pluripotent stem cells to manufacture natural killer cell therapies	Keerthana Shankar, Christian M. Capitini, Krishanu Saha	Article
2020	Geometry, inference, complexity, and democracy	Jordan S. Ellenberg	Preprint
2020	Graph-guided regularized regression of Pacific Ocean climate variables to increase predictive skill of southwestern US winter precipitation	Abby Stevens, Rebecca Willett, Antonios Mamalakis, Efi Foufoula-Georgiou, Alejandro Tejedor, James T. Randerson, Padhraic Smyth, Stephen Wright	Article
2020	Gut microbiome variation modulates the effects of dietary fiber on host 2 metabolism	Sofia M. Murga-Garrido, Qilin Hong, Tzu-Wen L. Cross, Evan R. Hutchison, Jessica Han , Sydney P. Thomas, Eugenio I. Vivas, John Denu, Danilo G. Ceschin, Zheng-Zheng Tang, Federico E. Rey	Preprint
2020	Highly efficient removal of methylene blue dye from an aqueous solution using cellulose acetate nanofibrous membranes modified by polydopamine	Jiaqi Cheng, Conghua Zhan, Jiahui Wu, Zhixiang Cui, Junhui Si, Qianting Wang, Xiangfang Peng, Lih-Sheng Turng	Article
2020	High-resolution interactive immersive renderings of real-world environments	Kevin Ponto, Ross Tredinnick	Article
2020	HP1υ regulates H3K36 methylation and pluripotency in embryonic stem cells	Nur Zafirah Zaidan, Rupa Sridharan	Article
2020	Integer packing sets form a well-quasi-ordering	Alberto Del Pia, Dion Gijswijt, Jeff Linderoth, Haoran Zhu	Article
2020	Intelligent setting of process parameters for injection molding based on case-based reasoning for molding features	Shengrui Yu, Tianfeng Zhang, Yun Zhang, Zhigao Huang, Huang Gao, Wen Han, Lih-Sheng Turng, Huamin Zhou	Article
2020	Intelligent technologies for polymer injection molding	Peng Zhao, Jianfeng Zhang, Zhengyang Dong, Junye Huang, Hongwei Zhou, Jianzhong Fu, Lih-Sheng Turng	Article
2020	KinderMiner Web: a simple web tool for ranking pairwise associations in biomedical applications	Finn Kuusisto, Daniel Ng, John Steill, Ian Ross, Miron Livny, James Thomson, David Page, Ron Stewart	Preprint
2020	Label-free classification of T cell activation	Melissa C. Skala, Alex J. Walsh, Kelsey Tweed, Katie Mueller, Isabel Jones, Steven M. Trier, Krishanu Saha	Proceeding
2020	Lagrangian dual decision rules for multistage stochastic mixed integer programming	Maryam Daryalal, Merve Bodur, James R. Luedtke	Preprint
2020	Linear programming and community detection	Alberto Del Pia, Aida Khajavirad, Dmitriy Kunisky	Preprint
2020	Manifold learning and nonlinear homogenization	Shi Chen, Qin Li, Jiangfeng Lu , Stephen J. Wright	Preprint
2020	MaxiMin active learning in overparameterized model classes	Mina Karzand, Robert D. Nowak	Article
2020	Measuring visual acuity and stereo accuracy as mediated by immersive displays	Alex Peer, Kevin Ponto	Article
2020	Metabolism and the epigenome: a dynamic relationship	Spencer A. Haws, Cassandra M. Leech, John M. Denu	Article
2020	Methods for controlled induction of singular rosette cytoarchitecture within human pluripotent stem cell-derived neural multicellular assemblies	Alireza Aghayee, Randolph Ashton	Book
2020	Mixed-Integer linear programming for scheduling unconventional oil field development	Akhilesh Soni, Jeff Linderoth, James Luedtke, Fabian Rigterink	Article
2020	Multi-cover inequalities for totally-ordered multiple knapsack sets	Alberto Del Pia, Jeff Linderoth, Haoran Zhu	Preprint
2020	Multi-trait analysis of rare-variant association summary statistics using MTAR	Lan Luo, Judong Shen, Hong Zhang, Aparna Chhibber, Devan V. Mehrotra, Zheng-Zheng Tang	Article
2020	Multivalent interactions drive nucleosome binding and efficient chromatin deacetylation by SIRT6	Wallace H. Liu, Jie Zheng, Jessica L. Feldman, Mark A. Klein, Vyacheslav I. Kuznetsov, Craig L. Peterson, Patrick R. Griffin, John M. Denu	Article
2020	Neural networks, ridge splines, and TV regularization in the radon domain	Rahul Parhi, Robert D. Nowak	Preprint
2020	Nonvanishing of hyperelliptic zeta functions over finite fields	Jordan S. Ellenberg, Wanlin Li, Mark Shusterman	Article
2020	On regret with multiple best arms	Yinglun Zhu, Robert Nowak	Preprint
2020	Optimal confidence regions for the multinomial parameter	Matthew L. Malloy, Ardhendu Tripathy, Robert D. Nowak	Preprint
2020	Optimization-based dispatching policies for open-pit mining	Amanda Smith, Jeff Linderoth, Jim Luedtke	Article
2020	Orbital conflict: cutting planes for symmetric integer programs	Jeff Linderoth, José Núñez Ares,	Article
2020	pH-Responsive rolymer-drug conjugate: an effective strategy to combat the antimicrobial resistance	Mingzhou Ye, Yi Zhao, Yuyuan Wang, Nisakorn Yodsanit, Ruosen Xie, Shaoqin Gong	Article
2020	Piecewise polyhedral formulations for a multilinear term	Kaarthik Sundar, Harsha Nagarajan, Site Wang, Jeff Linderoth, Russell Bent	Preprint
2020	Poly[(Butyl acrylate)-co-(butyl methacrylate)] as transparent tribopositive material for high-performance hydrogel-based triboelectric nanogenerators	Hao-Yang MiHao-Yang Mi, Xin Jing, Yuyuan Wang, Xingxing Shi, Heng Li, Chuntai Liu, Changyu Shen, Lih-Sheng Turng, and Shaoqin Gong	Article
2020	Principles, technologies, and time: The translational journey of the HTCondor-CE	Brian Bockelman, Miron Livny, Brian Lin, Prancesco Prelz	Preprint
2020	Proximity in concave integer quadratic programming	Alberto Del Pia, Mingchen Ma	Preprint
2020	Random coordinate Langevin Monte Carlo	Zhiyan Ding, Qin Li, Jianfeng Lu, Stephen J Wright	Preprint
2020	Random coordinate underdamped Langevin Monte Carlo	Zhiyan Ding, Qin Li, Jianfeng Lu, Stephen J Wright	Preprint
2020	Recent progress on nanoparticles for argeted aneurysm treatment and imaging	Nisakorn Yodsanit, Bowen Wang, Yi Zhao, Lian-Wang Guo, K. Craig Kent, Shaoqin Gong	Article
2020	Residuals-based distributionally robust optimization with covariate information	Rohit Kannan, Güzin Bayrakasan, James R. Luedtke	Preprint
2020	Robust outlier arm identification	Yinglun Zhu, Sumeet Katariya, Robert Nowak	Proceeding
2020	Self-acetylation at the active site of phosphoenolpyruvate carboxykinase (PCK1) controls enzyme activity	Pedro Latorre-Muro, Josue Baeza, Ramon Hurtado-Guerrero, Thomas Hicks, Ignacio Delso, Cristina Hernández-Ruiz, Adrian Velazquez-Campoy, Alexis J Lawton, Jesus Angulo, John M. Denu, Jose A Carrodeguas	Article
2020	Semantic discriminability for visual communication	Karen B. Schloss, Zachary Leggon, Laurent Lessard	Preprint
2020	Stability analysis of discrete-time linear complementarity systems	Arvind U. Raghunathan, Jeffrey T. Linderoth	Preprint
2020	Systematic analysis of distributed optimization algorithms over jointly-connected networks	Bryan Van Scoy, Laurent Lessard	Preprint
2020	The ceresa class: Tropical, topological, and algebraic	Daniel Corey, Jordan Ellenberg, Wanlin Li	Preprint
2020	The drivers of greenhouse gas emissions intensity improvements in major economies: analysis of trends 1995-2009	Madanmohan Ghosh, Deming Luo, Muhammad Shahid Siddiqui, Thomas Rutherford, Yunfa Zhu	Article
2020	The effect of micromechanics models on mechanical property predictions for short fiber composites	Jian Zhao, Dong-Xiao Su, Jin-ming Yi, Gengdong Cheng, Lih-Sheng Turng, Tim Osswald	Article
2020	The effects of systematic environmental manipulation on gait of older adults	Max Toepfer, Alejandra Padilla, Kevin Ponto, Andrea H Mason, Kristen A Pickett	Article
2020	The merger that made us	David A. Baum, Buzz Baum	Article
2020	The pegasus workflow management system: Translational computer science in practice	E Deelman, RF daSilva, K Vahi, M Rynce, R Mayani, Ryan Tanaka, Wendy Whitcup, Miron Livny	Article
2020	The relation between color and spatial structure for interpreting colormap data visualizations	Shannon C. Sibrel; Ragini Rathore; Laurent Lessard; Karen B. Schloss	Article
2020	The role of neural network activation functions	Rahul Parhi, Robert D. Nowak	Article
2020	Thermosensitive polyacrylonitrile/polyethylene oxide/polyacrylonitrile membrane separators for prompt and safer thermal lithium-ion battery shutdown	Wenzheng Gong, Zhi Zhang, Shuya Wei, Shilun Ruan, Changyu Shen, Lih-Sheng Turng	Article
2020	Transitions between biomes are common and directional in Bombacoideae (Malvaceae)	Alexander Zizka, Jefferson G. Carvallho-Sobrinho, R. Toby Pennington, Luciano P. Queiroz, Suzana Alcantara, David A. Baum, Christine D. Bacon, Alexandre Antonelli	Article
2020	UW Virtual Brain Project: Assessing benefits of VR education	Melissa A. Schoenlein, Nathaniel Miller, Chris Racey, Simon Smith, Ross Treddinick, Chris Castro, Bas Rokers, Karen B. Schloss	Article
2020	Variable smoothing for weakly convex composite functions	Axel Böhm, Stephen J. Wright	Preprint

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2020 Publications

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