Recent Publications

Recent publications from our faculty and fellows during their time at WID are listed below. Please see each publication for additional information.

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YearTitleAuthor(s)Type
2024A double-expanded polytetrafluoroethylene fabrication method for increased mechanical compliance in tubular vascular graft applicationsEdward Chen, Lih-Sheng TurngArticle
2024A framework for balancing power grid efficiency and risk with bi-objective stochastic integer optimizationRamsey Rossmann, Mihai Anitescu, Julie Bessac, Michael Ferris, Mitchell Krock, James Luedtke, Line RoaldPreprint
2024A longitudinal analysis of children's communicative actsClaire Augusta Bergey, Misha E O'Keeffe, Robert HawkinsProceeding
2024A mathematical framework, a taxonomy of modeling paradigms, and a suite of learning techniques for neural-symbolic systemsCharles Dickens, Connor Pryor, Changyu Gao, Alon Albalak, Eriq Augustine, William Wang, Stephen Wright, Lise GetoorPreprint
2024An engineered in vitro model of the human myotendinous junctionMitchell Josvai, Erzsebet Polyak, Meghana Kalluri, Samantha Robertson, Wendy C. Crone, Masatoshi Suzuki Article
2024An experimental design framework for label-efficient supervised finetuning of large language modelsGantavya Bhatt, Yifang Chen, Arnav M. Das, Jifan Zhang ,Sang T. Truong, Stephen Mussmann, Yinglun Zhu, Jeffrey Bilmes, Simon S. Du, Kevin Jamieson, Jordan T. Ash, Robert D. NowakPreprint
2024Better than Goodenough? Evaluating new computational techniques for finding diagnostic structure in children's drawingsClint A. Jensen, Timothy T. Rogers, Karl S. RosengrenArticle
2024Beyond demographics: Aligning role-playing LLM-based agents using human belief networksYun-Shiuan Chuang, Zach Studdiford, Krirk Nirunwiroj, Agam Goyal, Vincent V. Frigo, Sijia Yang, Dhavan Shah, Junjie Hu, Timothy T. RogersPreprint
2024Complex in vitro model characterization for context of use in toxicologic pathology: Use cases by collaborative teams of biologists, bioengineers, and pathologistsNadine Stokar-Regenscheit, Luisa Bell, Brian Berridge, Daniel Rudmann, Danilo Tagle, Passley Hargrove-Grimes, Dirk Schaudin, Kerstin Hahn, Julia Kühnlenz, Randolph S. Ashton, Min Tseng , Mike Reichelt, Steven T. Laing, Tomomi Kiyota, Ronnie Chamanza , Radhakrishna Sura, Lindsay TomlinsonArticle
2024Contrastive learning with orthonormal anchors (CLOA)Huanran Li, Daniel Pimentel-AlarcónPreprint
2024Convex and bilevel optimization for neural-symbolic inference and learningCharles Dickens, Changyu Gao, Connor Pryor, Stephen Wright, Lise GetoorPreprint
2024CRISPR VISION Program: Nonviral genome editing to treat congenital blindnessBikash R Pattnaik, Krishanu Saha, David M Gamm, Shaoqin Sarah Gong, T Michael Nork, William L Murphy, Rina Mepani, Mary HaakFrendschoProceeding
2024Data science principles for interpretable and explainable AI Kris SankaranPreprint
2024Design and synthesis of P(AAm-co-NaAMPS)-Alginate-Xanthan hydrogels and the study of their mechanical and rheological properties in artificial vascular graft applicationsZhutong Li, Joshua Giarto, Jue Zhang, Jinsu Gim, Edward Chen, Eduardo Enriquez, Lauren Jafuta, Esha Mahalingam, Lih-Sheng TurngArticle
2024Distributed statistical inference in social interaction networksYuliya Zubak, Pranav Dronavalli, Yun-Shiuan Chuang, Robert HawkinsProceeding
2024eRNPs, a programmable ribonucleoprotein, edits the retinal pigment epithelial cellsPawan Shahi, Rina Mepani, Aaron J Cantor, Mary Janatpour, Mary HaakFrendscho, Krishanu Saha, Bikash R PattnaikProceeding
2024Estimating human color-concept associations from multimodal language modelsKushin, Mukherjee, Timothy Rogers, Karen SchlossProceeding
2024Evidence of heritability in prebiotically realistic membrane-bound systemsTymofii Sokolskyi, Pavani Ganju, Ronan Montgomery-Taylor, David A. BaumArticle
2024Explainable artificial intelligence and multi-stage transfer learning for injection molding quality predictionChung-Yin Lin, Jinsu Gim, Demitri Shotwell, Mong-Tung Lin, Jia-Hau Liu, Lih-Sheng TurngArticle
2024Exploring the design space of optical see-through AR head-mounted displays to support first responders in the fieldKexin Zhang, Brianna Cochran, Ruijia Chen, Lance Hartung, Bryce Sprecher, Ross Tredinnick, Kevin Ponto, Suman Banerjee, Yuhang ZhaoPreprint
2024Extending the reach of first-order algorithms for nonconvex min-max problems with cohypomonotonicityAhmet Alacaoglu, Donghwan Kim, Stephen J. WrightPreprint
2024Factorized binary polynomial optimizationAlberto Del PiaPreprint
2024Fair prediction of 2-year stroke risk in patients with atrial fibrillationJifan Gao, Philip Mar, Zheng-Zheng Tang, Guanhua ChenArticle
2024Foundry-ML - Software and services to simplify access to machine learning datasets in materials scienceKJ Schmidt, Aristana Scourtas, Marcus Schwarting, Logan Ward , Steve Wangen, Isaac Darling, Ethan Truelove, Aadit Ambadkar, Ribhav Bose, Zoa Katok, Jingrui Wei, Xiangguo Li, Ryan Jacobs, Lane Schultz, Doyeon Kim, Michael Ferris, Paul M. Voyles, Dane Morgan, Ian Foster, Paul M. Voyles, Ben BlaiszikArticle
2024Future prediction can be a strong evidence of good history representation in partially observable environmentsJeongyeol Kwon, Liu Yang, Robert Nowak, Josiah HannaPreprint
2024Generalization and abstraction: Human memory as a magic libraryTimothy T. RogersBook
2024GrassCaré: Visualizing the Grassmannian on the Poincaré diskH. Li, D. Pimentel-AlarcónArticle
2024How to make the gradients small privately: Improved rates for differentially private non-convexAndrew Lowy, Jonathan Ullman, Stephen J. WrightPreprint
2024In vitro encapsulation and expansion of T and CAR-T cells using 3D synthetic thermo-responsive matricesGaby D. Lizana-Vasquez, Janet Mendez-Vega, Dan Cappabianca, Krishanu Saha, Madeline Torres-LugoArticle
2024Influence of remodeled ECM and co-culture with iPSC-derived cardiac fibroblasts on the mechanical function of micropatterned iPSC-derived cardiomyocytesA. Stempien, M. Josvai, J. Notbohm, J. Zhang, T. J. Kam, W. C. CroneArticle
2024Interaction structure constrains the emergence of conventions in group communicationVeronica Boyce, Robert D. Hawkins, Noah D. Goodman, Michael C. FrankArticle
2024Label free metabolic imaging to enhance the efficacy of Chimeric Antigen Receptor T cell therapyDan L. Pham, Daniel Cappabianca, Matthew H. Forsberg, Cole Weaver, Katherine P. Mueller, Anna Tommasi, Jolanta Vidugiriene, Anthony Lauer, Kayla Sylvester, Madison Bugel, Christian M. Capitini, Krishanu Saha, Melissa C. SkalaPreprint
2024Learning from the best: Active learning for wireless communicationsNasim Soltani, Jifan Zhang, Batool Salehi, Debashri Roy, Robert Nowak, Kaushik ChowdhuryPreprint
2024Lexical search and social reasoning jointly explain communication in associative reference gamesAA Kumar, R HawkinsPreprint
2024Metabolic priming of GD2 TRAC-CAR T cells during manufacturing promotes memory phenotypes while enhancing persistenceDan Cappabianca, Dan Pham, Matthew H. Forsberg, Madison Bugel, Anna Tommasi, Anthony Lauer, Jolanta Vidugiriene, Brookelyn Hrdlicka, Alexandria McHale, Quaovi Sodji, Melissa C. Skala, Christian M. Capitini, Krishanu SahaPreprint
2024Multimodal nanoimmunotherapy engages neutrophils to eliminate Staphylococcus aureus infectionsJingcheng Zhu, Ruosen Xie, Ruixuan Gao, Yi Zhao, Nisakorn Yodsanit, Min Zhu, Jacobus C. Burger, Mingzhou Ye, Yao Tong, Shaoqin GongArticle
2024Non-viral expression of chimeric antigen receptors with multiplex gene editing in primary T cellsDan Cappabianca, Jingling Li, Yueting Zheng, Cac Tran, Kassandra Kasparek, Pedro Mendez, Ricky Thu, Travis Maures, Christian M. Capitini, Robert Deans, Krishanu SahaArticle
2024Optimal design for linear models via gradient flowRuhui Jin, Martin Guerra, Qin Li, Stephen WrightPreprint
2024Past, present, and future thoughts on immersive visualization laboratories through the story of the Wisconsin Institute for Discovery Virtual Environments GroupRoss Tredinnick, Karen Schloss, Kevin PontoArticle
2024PD35-07 Identifying and targeting unregulated histone modifying enzymes involved in prostate cancer cell survival after androgen deprivation therapy Tanaya Purohit, Emily Schmitt, Marcelo Bigarella, Kayla Bahr, Sean Sardeson, Diana Garcia, Karla Esbona, Peter W. Lewis, John M. Denu, Wei Huang, Bing Yang, David JarrardArticle
2024Perception of physicians' notes among parents of different health literacy levelsCarrie L. Nacht, Nora Jacobson, Olayinka Shiyanbola, Catherine Arnott-Smith, Peter L.T. Hoonakker, Ryan J. Coller, Shannon M. Dean, Daniel J. Sklansky, Windy Smith, Carley M. Sprackling, Michelle M. KellyArticle
2024Polyhedral geometry and combinatorics of an autocatalytic ecosystemPraful Gagrani, Victor Blanco, Eric Smith, David BaumArticle
2024Pretraining decision transformers with reward prediction for in-context multi-task structured bandit learningSubhojyoti Mukherjee, Josiah P. Hanna, Qiaomin Xie, Robert NowakPreprint
2024Principle component trees and their persistent homologyBen Kizaric, Daniel Pimentel-AlarcónProceeding
2024Probing-enhanced stochastic programmingZhichao Ma, Youngdae Kim, Jeff Linderoth, James R. Luedtke, Logan R. MatthewsPreprint
2024Protein restriction slows the development and progression of Alzheimer's disease in miceR Babygirija, MM Sonsalla, J Mill, I James, JH Han, CL Green, MF Calubag, G Wade, A Tobon, J Michael, MM Trautman, R Matoska, C Yeh, I Grunow, HH Pak, MJ Rigby, DA Baldwin, NM Niemi, JM Denu, L Puglielli, J Simcox, DW LammingArticle
2024Quality and accessibility of home assessment mHealth apps for community living: Systematic reviewJung-hye Shin, Rachael Shields, Jenny Lee, Zachary Skrove, Ross Tredinnick, Kevin Ponto, Beth FieldsArticle
2024ReLUs are sufficient for learning implicit neural representationsJoseph Shenouda, Yamin Zhou, Robert D. NowakPreprint
2024SaVeR: Optimal data collection strategy for safe policy evaluation in tabular MDPSubhojyoti Mukherjee, Josiah P. Hanna, Robert NowakPreprint
2024Self-organization of embryonic stem cells into a reproducible embryo model through epigenome editingGerrald A. Lodewijk, Sayaka Kozuki, Clara Han, Benjamin R. Topacio, Abolfazl Zargari, Seungho Lee, Gavin Knight, Randolph Ashton, Lei S. Qi, S. Ali ShariatiPreprint
2024Semantic cognition: A parallel distributed processing approachTimothy T. Rogers, James L. McClellandBook
2024Semantic distance organizes social knowledge: Insights from semantic dementia and cross-modal conceptual spaceY. Ivette Colón, Matthew Rouse, Matthew A. Lambon Ralph, Timothy T. RogersPreprint
2024Surface colonization by Flavobacterium johnsoniae promotes its survival in a model microbial communityShruthi Magesh, Amanda I. Hurley, Julia F. Nepper, Marc G. Chevrette, Jonathan H. Schrope, Chao Li, David J. Beebe, Jo HandelsmanPreprint
2024Targeted NAD+ delivery for intimal hyperplasia and re-endothelialization: A novel anti-restenotic therapy approachLi Yin, Yao Tong, Zain Husain Islam, Kaijie Zhang, Ruosen Xie, Jacobus Burger, Nicholas Hoyt, Eric William Kent, William Aaron Marcum, Campbell Johnston, Rohan Kanchetty, Zoe Tetz, Sophia Stanisic, Yitao Huang, Lian-Wang Guo, Shaoqin Gong, Bowen WangPreprint
2024The delusional hedge algorithm as a model of human learning from diverse opinionsYun-Shiuan Chuang, Jerry Zhu, Timothy T. RogersPreprint
2024The mixed integer trust region problemAlberto Del PiaPreprint
2024The wisdom of partisan crowds: Comparing collective intelligence in humans and LLM-based agents Yun-Shiuan Chuang, Nikunj Harlalka, Siddharth Suresh, Agam Goyal, Robert D. Hawkins, Sijia Yang, Dhavan V. Shah, Junjie Hu, Timothy T. RogersPreprint
2024Three-dimensional quantitative phase imaging for the assessment of glioblastoma multiforme treatment efficacy in human spheCaroline Filan, Amin Davarzani, Dan Cappabianca, Anna Tommasi, Lauren Sarko, Nina La Vonne Denne, Leidong Mao, Krishanu Saha, Lohitash Kraumbaiah, and Francisco E. RoblesProceeding
2024Toddlers actively sample from reliable and unreliable speakersJess Mankewitz, Robert Hawkins, Jenny SaffranProceeding
2024TransFusion: Contrastive learning with transformersHuanran Li, Daniel Pimentel-AlarcónPreprint
2024Unfolding structure in the drawings of cubesClint A Jensen, Timothy T Rogers, Brittany G Travers, Heather Kirkorian, Karl RosengrenProceeding
2024Virus-free CRISPR knock-in of a chimeric antigen receptor into KLRC1 generates potent GD2-specific natural killer cellsKeerthana Shankar, Isabella Zingler-Hoslet, Lei Shi, Varun Katta, Brittany E. Russell, Shengdar Q. Tsai, Christian M. Capitini, Krishanu SahaPreprint
2024What should I do now? Goal-centric outlooks on learning, exploration, and communicationCédric Colas, Junyi Chu, Gaia Molinaro, Robert HawkinsProceeding
2024When and why does shared reality generalize?Wasita Mahaphanit, Christopher Welker, Helen Schmidt, Luke J. Chang, Robert HawkinsPreprint