2012 Publications

Publications from our faculty and fellows during their time at WID are listed below. Please see each publication for additional information.

2012 Publications

Recent publications from our faculty and fellows during their time at WID are listed below. Please see each publication for additional information.

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Year	Title	Author(s)
2012	10 activity theory in the learning technologies	DeVane, Benjamin; Squire, Kurt D
2012	2 designed cultures	Squire, Kurt
2012	6.047/6.878 lecture 18 regulatory networks: inference, analysis, application	Roy, Sushmita; Feizi, Soheil
2012	A classification of errors in lay comprehension of medical documents	Keselman, Alla; Smith, Catherine Arnott
2012	A cross case analysis of two out-of-school programs based on virtual worlds	Steinkuehler, Constance; Alagoz, Esra; King, Elizabeth; Martin, Crystle
2012	A new microcellular injection molding process for polycarbonate using water as the physical blowing agent	Peng, Jun; Turng, Lih-Sheng; Peng, Xiang-Fang
2012	A quantitative comet infection assay for influenza virus	Lindsay, Stephen M; Timm, Andrea; Yin, John
2012	A theory-based online hip fracture resource center for caregivers: effects on dyads	Nahm, Eun-Shim; Resnick, Barbara; Orwig, Denise; Magaziner, Jay; Bellantoni, Michelle; Sterling, Robert; Brennan, Patricia F
2012	Accelerated block-coordinate relaxation for regularized optimization	Wright, Stephen J
2012	Adaptive sensing for sparse signal recovery	Haupt, Jarvis; Nowak, Robert
2012	Algorithms and software for convex mixed integer nonlinear programs	Bonami, Pierre; Kilinç, Mustafa; Linderoth, Jeff
2012	Algorithms for sparse optimization and machine learning	Wright, Stephen
2012	Alterations in cerebrospinal fluid proteins in a presymptomatic primary glioma model	Gonçalves, Joana P; Francisco, Alexandre P; Moreau, Yves; Madeira, Sara C; Recht, Benjamin
2012	Amplifications of learning: use of mobile media devices among youth	Squire, Kurt; Dikkers, Seann
2012	Arithmetic Veech sublattices of SL(2,Z)	Ellenberg, Jordan S; McReynolds, DB
2012	Artificial neural network--based supercritical fluid dosage control for microcellular injection molding	Sun, Xiaofei; Turng, Lih-Sheng; Dougherty, Eugene; Gorton, Patrick
2012	Astrocytes regulate adult hippocampal neurogenesis through ephrin-B signaling	Ashton, Randolph S; Conway, Anthony; Pangarkar, Chinmay; Bergen, Jamie; Lim, Kwang-Il; Shah, Priya; Bissell, Mina; Schaffer, David V
2012	Big data versus the crowd: looking for relationships in all the right places	Zhang, Ce; Niu, Feng; Ré, Christopher; Shavlik, Jude
2012	Bivalent recognition of a single nucleosome by the tandem PHD fingers of CHD4 is required for CHD4-mediated repression	Musselman, Catherine A; Ramirez, Julita; Sims, Jennifer K; Mansfield, Robyn E; Oliver, Samuel S; Denu, John M; Mackay, Joel P; Wade, Paul A; Hagman, James; Kutateladze, Tatiana G
2012	Bivalent recognition of nucleosomes by the tandem PHD fingers of the CHD4 ATPase is required for CHD4-mediated repression	Musselman, Catherine A; Ramìrez, Julita; Sims, Jennifer K; Mansfield, Robyn E; Oliver, Samuel S; Denu, John M; Mackay, Joel P; Wade, Paul A; Hagman, James; Kutateladze, Tatiana G
2012	Building an entity-centric stream filtering test collection for TREC 2012	Frank, John R; Kleiman-Weiner, Max; Roberts, Daniel A; Niu, Feng; Zhang, Ce; Ré, Christopher; Soboroff, Ian
2012	Characterization of the interfacial adhesion for responsive hydrogels on substrates	Benjamin, Chandler; Springmann, John; Chindhy, Shahzad; Crone, Wendy
2012	Characterizing patient care in hospital emergency departments	Ozkaynak, Mustafa; Brennan, Patricia Flatley
2012	Chemically modified graphene/P (VDF-TrFE-CFE) electroactive polymer nanocomposites with superior electromechanical performance	Javadi, Alireza; Xiao, Yuling; Xu, Wenjin; Gong, Shaoqin
2012	Co-delivery of doxorubicin and siRNA using octreotide-conjugated gold nanorods for targeted neuroendocrine cancer therapy	Xiao, Yuling; Jaskula-Sztul, Renata; Javadi, Alireza; Xu, Wenjin; Eide, Jacob; Dammalapati, Ajitha; Kunnimalaiyaan, Muthusamy; Chen, Herbert; Gong, Shaoqin
2012	Combinatorics of cis-regulatory element evolution in stress response modules of ascomycete yeasts	Garcìa-González, Aurian; Roy, Sushmita; Konieczka, Jay; Thompson, Dawn; Regev, Aviv
2012	Comparisons of microcellular polylactic acid parts injection molded with supercritical nitrogen and expandable thermoplastic microspheres: Surface roughness, tensile properties, and morphology	Peng, Jun; Srithep, Yottha; Wang, Jian; Yu, Emily; Turng, Lih-Sheng; Peng, Xiang-Fang
2012	Computerized decision support system and decision quality of nurses	Fonseca, Lìgia Fahl; Brennan, Patrìcia Flatley
2012	Correlated Gaussian designs for compressive imaging	Rao, Nikhil S; Nowak, Robert D
2012	DeepDive: web-scale knowledge-base construction using statistical learning and inference.	Niu, Feng; Zhang, Ce; Ré, Christopher; Shavlik, Jude W
2012	Deformation and fracture of polymer/metal composites subjected to cold rolling	Calcagno, BO; Hart, KR; Springmann, JC; Antoun, GG; Crone, WC
2012	Designing consumer health IT to enhance usability among different racial and ethnic groups within the United States	Valdez, Rupa S; Gibbons, M Chris; Siegel, Elliot R; Kukafka, Rita; Brennan, Patricia Flatley
2012	Dynamics and processing in finite self-similar networks	DeDeo, Simon; Krakauer, David C
2012	Effect of material parameters on mechanical properties of biodegradable polymers/nanofibrillated cellulose (NFC) nano composites	Srithep, Yottha; Sabo, Ronald; Clemons, Craig; Turng, Lih-Sheng; Pilla, Srikanth; Peng, Jun
2012	Effective replays and summarization of virtual experiences	Ponto, Kevin; Kohlmann, Joe; Gleicher, Michael
2012	Effects of pressure and supercritical fluid on melt viscosity of LDPE in conventional and microcellular injection molding	Hsu, C-L; Turng, L-S; Osswald, TA; Rudolph, N; Dougherty, E; Gorton, P
2012	Effects of substrate mechanics on contractility of cardiomyocytes generated from human pluripotent stem cells	Hazeltine, Laurie B; Simmons, Chelsey S; Salick, Max R; Lian, Xiaojun; Badur, Mehmet G; Han, Wenqing; Delgado, Stephanie M; Wakatsuki, Tetsuro; Crone, Wendy C; Pruitt, Beth L; others
2012	Efficiency and equity implications of alternative instruments to reduce carbon leakage	Böhringer, Christoph; Carbone, Jared C; Rutherford, Thomas F
2012	Efficient network tomography for internet topology discovery	Eriksson, Brian; Dasarathy, Gautam; Barford, Paul; Nowak, Robert
2012	Elementary: large-scale knowledge-base construction via machine learning and statistical inference	Niu, Feng; Zhang, Ce; Ré, Christopher; Shavlik, Jude
2012	Envisioning the future of home care: applications of immersive virtual reality.	Brennan, Patricia Flatley; Smith, C Arnott; Ponto, Kevin; Radwin, Robert; Kreutz, Kendra
2012	Evolution and the mechanisms of decision making	Flack, Jessica; Krakauer, David; Hammerstein, Peter
2012	Expander graphs, gonality, and variation of Galois representations	Ellenberg, Jordan S; Hall, Chris; Kowalski, Emmanuel; others
2012	Extended mathematical programming: competition and stochasticity	Ferris, Michael C
2012	Fabrication and characterization of injection molded poly (ε-caprolactone) and poly (ε-caprolactone)/hydroxyapatite scaffolds for tissue engineering	Cui, Zhixiang; Nelson, Brenton; Peng, YiYan; Li, Ke; Pilla, Srikanth; Li, Wan-Ju; Turng, Lih-Sheng; Shen, Changyu
2012	Fabrication of tissue engineering scaf-folds	Kramschuster, Adam; Turng, Lih-Sheng
2012	Factoring nonnegative matrices with linear programs	Recht, Ben; Re, Christopher; Tropp, Joel; Bittorf, Victor
2012	Fortifying the link between SIRT1, resveratrol, and mitochondrial function	Denu, John M
2012	Games, learning, and society: learning and meaning in the digital age	Barab, Sasha; Squire, Kurt; Steinkuehler, Constance
2012	General and environmental health as the context for science education	Keselman, Alla; Hundal, Savreen; Smith, Catherine Arnott
2012	Gold nanorods conjugated with doxorubicin and cRGD for combined anticancer drug delivery and PET imaging	Xiao, Yuling; Hong, Hao; Matson, Vyara Z; Javadi, Alireza; Xu, Wenjin; Yang, Yunan; Zhang, Yin; Engle, Jonathan W; Nickles, Robert J; Cai, Weibo; others
2012	Green jobs and renewable electricity policies: employment impacts of Ontario's feed-in tariff	Böhringer, Christoph; Rivers, Nicholas J; Rutherford, Thomas F; Wigle, Randall
2012	Guiding the design of evaluations of innovations in health informatics: a framework and a case study of the SMArt SHARP evaluation	Ramly, Edmond; Brennan, Patricia Flatley
2012	GUSS: solving collections of data related models within GAMS	Bussieck, Michael R; Ferris, Michael C; Lohmann, Timo
2012	High throughput strategy to identify inhibitors of histone-binding domains	Wagner, Elise K; Albaugh, Brittany N; Denu, John M
2012	High-rank matrix completion	Eriksson, Brian; Balzano, Laura; Nowak, Robert
2012	Holonomic analysis of quasibrittle fracture with nonlinear softening	Tin-Loi, F; Ferris, MC
2012	How evolutionary systems biology will help understand adaptive landscapes and distributions of mutational effects	Loewe, Laurence
2012	Identification and characterization of small molecule inhibitors of a plant homeodomain finger	Wagner, Elise K; Nath, Nidhi; Flemming, Rod; Feltenberger, John B; Denu, John M
2012	Identification and characterization of small molecules that inhibit binding of the third plant homeodomain finger of JARID1A to histone H3	Wagner, Elise Katherine; Flemming, Rod; Nath, Nidhi; Denu, John
2012	Introduction to the EMF 29 special issue on the role of border carbon adjustment in unilateral climate policy	Böhringer, Christoph; Rutherford, Thomas F; Balistreri, Edward J; Weyant, John
2012	IPP special issue on "Advanced Molding and Materials Processing Technology"	Chen, Shia-Chung; Lee, L James; Turng, Lih-Sheng
2012	Kinetics of virus production from single cells	Timm, Andrea; Yin, John
2012	K-subspaces with missing data	Balzano, Laura; Szlam, Arthur; Recht, Benjamin; Nowak, Robert
2012	Learning from Fukushima	Pfotenhauer, Sebastian M; Jones, Christopher F; Saha, Krishanu; Jasanoff, Sheila
2012	Linear system identification via atomic norm regularization	Shah, Parikshit; Bhaskar, Badri Narayan; Tang, Gongguo; Recht, Benjamin
2012	Manifold identification in dual averaging for regularized stochastic online learning	Lee, Sangkyun; Wright, Stephen J
2012	Measuring the stiffness of bacterial cells from growth rates in hydrogels of tunable elasticity	Tuson, Hannah H; Auer, George K; Renner, Lars D; Hasebe, Mariko; Tropini, Carolina; Salick, Max; Crone, Wendy C; Gopinathan, Ajay; Huang, Kerwyn Casey; Weibel, Douglas B
2012	Mental workload during brain--computer interface training	Felton, Elizabeth A; Williams, Justin C; Vanderheiden, Gregg C; Radwin, Robert G
2012	Microbial interaction networks in soil and in silico	Vetsigian, Kalin
2012	Minimax-optimal bounds for detectors based on estimated prior probabilities	Jiao, Jiantao; Zhang, Lin; Nowak, Robert D
2012	Minireview series on sirtuins: from biochemistry to health and disease	Denu, John M; Gottesfeld, Joel M
2012	Molecular characterization of multivalent bioconjugates by size-exclusion chromatography with multiangle laser light scattering	Pollock, Jacob F; Ashton, Randolph S; Rode, Nikhil A; Schaffer, David V; Healy, Kevin E
2012	Morphology and properties of porous and interconnected poly (ε-caprolactone) matrices using solid and microcellular injection molding	Cui, Zhixiang; Zhao, Haibin; Peng, Yiyan; Kaland, Michael; Turng, Lih-Sheng; Shen, Changyu
2012	Multifunctional gold nanorods for targeted drug delivery to carcinoids	Jaskula-Sztul, R; Xiao, Y; Javadi, A; Eide, J; Xu, W; Kunnimalaiyaan, M; Gong, S; Chen, H
2012	Multifunctional unimolecular micelles for cancer-targeted drug delivery and positron emission tomography imaging	Xiao, Yuling; Hong, Hao; Javadi, Alireza; Engle, Jonathan W; Xu, Wenjin; Yang, Yunan; Zhang, Yin; Barnhart, Todd E; Cai, Weibo; Gong, Shaoqin
2012	Multifunctional unimolecular micelles for image-guided drug delivery in cancer	Hong, Hao; Xiao, Yuling; Zhang, Yin; Javadia, Alireza; Engle, Jonathan; Xu, Wenjin; Yang, Yunan; Barnhart, Todd; Gong, Shaoqin; Cai, Weibo
2012	Multiple time-scales and the developmental dynamics of social systems	Flack, Jessica C
2012	Multivalent recognition of histone tails by the PHD fingers of CHD5	Oliver, Samuel S; Musselman, Catherine A; Srinivasan, Rajini; Svaren, John P; Kutateladze, Tatiana G; Denu, John M
2012	Nanofibrillated cellulose (NFC) reinforced polyvinyl alcohol (PVOH) nanocomposites: properties, solubility of carbon dioxide, and foaming	Srithep, Yottha; Turng, Lih-Sheng; Sabo, Ronald; Clemons, Craig
2012	Near-optimal compressive binary search	Malloy, Matthew L; Nowak, Robert D
2012	Observations of daily living: putting the "personal" in personal health records	Backonja, Uba; Kim, Katherine; Casper, Gail R; Patton, Timothy; Ramly, Edmond; Brennan, Patricia Flatley
2012	Online real-time presentation of virtual experiences for external viewers	Ponto, Kevin; Shin, Hyun Joon; Kohlmann, Joe; Gleicher, Michael
2012	Optimizing financial effects of HIE: a multi-party linear programming approach	Sridhar, Srikrishna; Brennan, Patricia Flatley; Wright, Stephen J; Robinson, Stephen M
2012	Optimizing statistical information extraction programs over evolving text	Chen, Fei; Feng, Xixuan; Re, Christopher; Wang, Min
2012	Overview of large scale optimization for discriminative training in speech recognition	Kanevsky, Dimitri; Heigold, Georg; Wright, Stephen; Ney, Hermann
2012	Perspective reformulation and applications	Günlük, Oktay; Linderoth, Jeff
2012	Posit: a lightweight approach for IP geolocation	Eriksson, Brian; Barford, Paul; Maggs, Bruce; Nowak, Robert
2012	Predictive regulatory models in Drosophila melanogaster by integrative inference of transcriptional networks	Marbach, Daniel; Roy, Sushmita; Ay, Ferhat; Meyer, Patrick E; Candeias, Rogerio; Kahveci, Tamer; Bristow, Christopher A; Kellis, Manolis
2012	Predictive regulatory models in of transcriptional networks	Marbach, Daniel; Roy, Sushmita; Ay, Ferhat; Meyer, PE; Candeias, R; Kahveci, T; Bristow, CA; Kellis, M
2012	Processing of poly (hydroxybutyrate-co-hydroxyvalerate)-based bionanocomposite foams using supercritical fluids	Javadi, Alireza; Srithep, Yottha; Clemons, Craig C; Turng, LS; Gong, Shaoqin
2012	Quantitative genome re-sequencing defines multiple mutations conferring chloroquine resistance in rodent malaria	Modrzynska, Katarzyna Kinga; Creasey, Alison; Loewe, Laurence; Cezard, Timothee; Borges, Sofia Trindade; Martinelli, Axel; Rodrigues, Louise; Cravo, Pedro; Blaxter, Mark; Carter, Richard; others
2012	Quantitative patterns of stylistic influence in the evolution of literature	Hughes, James M; Foti, Nicholas J; Krakauer, David C; Rockmore, Daniel N
2012	Query complexity of derivative-free optimization	Jamieson, Kevin G; Nowak, Robert D; Recht, Benjamin
2012	Quickest search for a rare distribution	Malloy, Matthew L; Tang, Gongguo; Nowak, Robert D
2012	Random pro-p groups, braid groups, and random tame Galois groups	Boston, Nigel; Ellenberg, Jordan S
2012	Recombination modulates how selection affects linked sites in Drosophila	McGaugh, Suzanne E; Heil, Caiti SS; Manzano-Winkler, Brenda; Loewe, Laurence; Goldstein, Steve; Himmel, Tiffany L; Noor, Mohamed AF
2012	Regulation of glycolytic enzyme phosphoglycerate mutase-1 by Sirt1 protein-mediated deacetylation	Hallows, William C; Yu, Wei; Denu, John M
2012	Relaxations for production planning problems with increasing by-products	Sridhar, Srikrishna; Linderoth, Jeff; Luedtke, James
2012	Robust spatio-temporal signal recovery from noisy counts in social media	Xu, Jun-Ming; Bhargava, Aniruddha; Nowak, Robert; Zhu, Xiaojin
2012	Role playing games for scientific citizenship	Gaydos, Matthew J; Squire, Kurt D
2012	Scaling inference for Markov logic via dual decomposition	Niu, Feng; Zhang, Ce; Re, Christopher; Shavlik, Jude
2012	Security analysis of smartphone point-of-sale systems.	Frisby, WesLee; Moench, Benjamin; Recht, Benjamin; Ristenpart, Thomas
2012	Sequential testing for sparse recovery	Malloy, Matthew L; Nowak, Robert
2012	Sequentially designed compressed sensing	Haupt, Jarvis; Baraniuk, Richard; Castro, Rui; Nowak, Robert
2012	Service desk calls in a home-based clinical informatics study: supporting end users in the field	Valdez, RS; Burke, LJ; Casper, GR; Sturgeon, BA; Rosmait, C; Palzkill, D; Hamann, D; Murphy, J; Brennan, PF
2012	Services liberalisation in the regions of Russia under WTO accession: regional household and poverty effects	Rutherford, Thomas F; Tarr, David G
2012	Signal recovery in unions of subspaces with applications to compressive imaging	Rao, Nikhil; Recht, Benjamin; Nowak, Robert
2012	SIRT3 protein deacetylates isocitrate dehydrogenase 2 (IDH2) and regulates mitochondrial redox status	Yu, Wei; Dittenhafer-Reed, Kristin E; Denu, John M
2012	Sirtuin catalysis and regulation	Feldman, Jessica L; Dittenhafer-Reed, Kristin E; Denu, John M
2012	Socioscope: spatio-temporal signal recovery from social media	Xu, Jun-Ming; Bhargava, Aniruddha; Nowak, Robert D; Zhu, Xiaojin
2012	Some results on the strength of relaxations of multilinear functions	Luedtke, James; Namazifar, Mahdi; Linderoth, Jeff
2012	Sparse code of conflict in a primate society	Daniels, Bryan C; Krakauer, David C; Flack, Jessica C
2012	Staffing call centers with uncertain demand forecasts: a chance-constrained optimization approach Cd: 120	Gurvich, Itai; Luedtke, James; Tezcan, Tolga
2012	Subglobal carbon policy and the competitive selection of heterogeneous firms	Balistreri, Edward J; Rutherford, Thomas F
2012	Technologies for education and technologies for learners: how information technologies are (and should be) changing schools	Halverson, Rich; Shapiro, B
2012	The convex geometry of linear inverse problems	Chandrasekaran, Venkat; Recht, Benjamin; Parrilo, Pablo A; Willsky, Alan S
2012	The deacetylase Sirt6 activates the acetyltransferase GCN5 and suppresses hepatic gluconeogenesis	Dominy, John E; Lee, Yoonjin; Jedrychowski, Mark P; Chim, Helen; Jurczak, Michael J; Camporez, Joao Paulo; Ruan, Hai-Bin; Feldman, Jessica; Pierce, Kerry; Mostoslavsky, Raul; others
2012	The evolution of human cooperation	Gintis, Herbert; Doebeli, Michael; Flack, Jessica
2012	The MADlib analytics library: or MAD skills, the SQL	Hellerstein, Joseph M; Ré, Christoper; Schoppmann, Florian; Wang, Daisy Zhe; Fratkin, Eugene; Gorajek, Aleksander; Ng, Kee Siong; Welton, Caleb; Feng, Xixuan; Li, Kun; others
2012	The Open Science Grid--support for multi-disciplinary team science--the adolescent years	Bauerdick, Lothar; Ernst, Michael; Fraser, Dan; Livny, Miron; Pordes, Ruth; Sehgal, Chander; Würthwein, Frank
2012	The partitioned LASSO-patternsearch algorithm with application to gene expression data	Shi, Weiliang; Wahba, Grace; Irizarry, Rafael A; Bravo, Hector Corrada; Wright, Stephen J
2012	The role of border carbon adjustment in unilateral climate policy: insights from a model-comparison study	Böhringer, Christoph; Rutherford, Thomas F; Balistreri, Edward J
2012	The role of border carbon adjustment in unilateral climate policy: overview of an Energy Modeling Forum study (EMF 29)	Böhringer, Christoph; Balistreri, Edward J; Rutherford, Thomas F
2012	Toward a noncommutative arithmetic-geometric mean inequality: conjectures, case-studies, and consequences.	Recht, Benjamin; Ré, Christopher
2012	Towards a unified architecture for in-RDBMS analytics	Feng, Xixuan; Kumar, Arun; Recht, Benjamin; Ré, Christopher
2012	Understanding cardinality estimation using entropy maximization	Ré, Christopher; Suciu, Dan
2012	Understanding persistent homology and Plex using a networking dataset	Balzano, Laura; Ellenberg, Jordan S
2012	Unilateral climate policy design: efficiency and equity implications of alternative instruments to reduce carbon leakage	Böhringer, Christoph; Carbone, Jared C; Rutherford, Thomas F
2012	Universal measurement bounds for structured sparse signal recovery	Rao, Nikhil; Recht, Ben; Nowak, Robert
2012	Virtual Exertions: a user interface combining visual information, kinesthetics and biofeedback for virtual object manipulation	Ponto, Kevin; Kimmel, Ryan; Kohlmann, Joe; Bartholomew, Aaron; Radwin, Robert G
2012	Web 2.0 literacy and secondary teacher education	Fahser-Herro, Danielle; Steinkuehler, Constance
2012	What counters antibiotic resistance in nature?	Chait, Remy; Vetsigian, Kalin; Kishony, Roy
2012	Worst-case optimal join algorithms	Ngo, Hung Q; Porat, Ely; Ré, Christopher; Rudra, Atri

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2012 Publications

2012 Publications

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