2011-2019 Publications

Publications from our faculty and fellows during their time at WID are listed below. Please see each publication for additional information.

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Year	Title	Author(s)
2019	100% renewable electricity with storage	Michael Ferris, Andy Philpott
2019	A 3D culture model of innervated human skeletal muscle enables studies of the adult neuromuscular junction	Mohsen Afshar Bakooshli, Ethan S Lippman, Ben Mulcahy, Nisha Iyer, Christine T Nguyen, Kayee Tung, Bryan Stewart, Hubrecht van den Dorpel, Tobias Fuehrmann, Molly Shoichet, Anne Bigot, Elena Pegoraro, Henry Ahn, Howard Ginsberg, Mei Zhen, Randolph Ashton, Penney Gilbert
2019	A biodegradable nanocapsule delivers a Cas9 ribonucleoprotein comples for in vivo genome editing	Guojun Chen, Amr A Abdeen, Yuyuan Wang, Pawan K Shahi, Samantha Robertson, Ruosen Xie, Masatoshi Suzuki, Bikash R Pattnaik, Krishanu Saha, Shaoqin Gong
2019	A candidate self-propagating system enriched by chemical ecosystem selection	Lena Vincent, H. James Cleaves, David A. Baum
2019	A cost-benefit analysis of 3D scanning technology for crime scene investigation	Ross Tredinnick, Simon Smith, Kevin Ponto
2019	A discrete least squares collocation method for two-dimensional nonlinear time-dependent partial differential equations	Fanhai Zeng, Ian Turner, Kevin Burrage, Stephen J. Wright
2019	A distributed optimization algorithm over time-varying graphs with efficient gradient evaluations	Bryan Van Scoy, Laurent Lessard
2019	A distributed quasi-Newton algorithm for primal and dual regularized empirical risk minimization	Ching-pei Lee, Cong Han Lim, Stephen J Wright
2019	A log-barrier Newton-CG method for bound constrained optimization with complesity guarantees	Michael O'Neill, Stephen J. Wright
2019	A low-rank Schwarz method for radiative transport equation with heterogeneous scattering coefficient	Ke Chen, Gin Li, Jianfeng Lu, Stephen J. Wright
2019	A practical guide for analysis of histone post-translational modifications by mass spectrometry: Best practices and pitfalls	Sydney P Thomas, Spencer A Haws, Laura E Borth, John M Denu
2019	A quick response and tribologically durable graphene heater for rapid heat cycle molding and its applications in injection molding	Huaguang Yang, Galip Yilmaz, Guebum Han, Melih eriten, Zhi Zhang, Shengrui Yu, Meinong Shi, Hua Yan, Weimin Yang, Pengcheng Xie, Lih-Sheng Turng
2019	Abstract SY44-02: Aberrant polycomb repression in midline and hindbrain tumors	Peter Lewis
2019	Acetyl-CoA flux regulates the proteome and acetyl-proteome to maintain intercellular metabolic crosstalk	Inca A Dieterich, Alexis J Lawton, Yajing Peng, Qing Yu, Timothy W Rhoads, Katherine A Overmyer, Yusi Cui, Eric A Armstrong, Porsha R Howell, Maggie S Burhans, Lingjun Li, John M Denu, Joshua J Coon, Rozalyn M Anderson, Luigi Puglielli
2019	Active learning in the overparametrized and interpolating regime	Mina Karzad, Robert D. Nowak
2019	An improved technique for dispersion of natural graphite particles in thermoplastic polyurethane by sub-critical gas-assisted processing	An Huang, Hankun Wang, Thomas Ellingham, Xiangfang Peng, Lih-Sheng Turng
2019	Analysis and design of first-order distributed optimization algorithms over time-varying graphs	Akhil Sundararajan, Bryan Van Scoy, Laurent Lessard
2019	Applications of virtual environments in human factors research and practice	Randall Spain, Benjamin Goldberg, Pete Khooshabeh, David Krum, Joshua Biro, Courtney Linder, Laura Stanley, Ross Tredinnick, Kevin Ponto, Logan Gisick, Matthew Pierce, Joseph Keebler, Phillip Young, Allison Hancock, Jennifer Phillips, Natalie Steinhauser, James Niehaus, Jeremy Flynn
2019	Bacterial analogs of plant tetrahydropyridine alkaloids mediate microbial interactions in a rhizosphere model system	Gabriel L. Lozano, Hyun Bong Park, Juan I. Bravo, Eric A. Armstrong, John M. Denu, Eric V. Stabb, Nichole A. Broderick, Jason M. Crawford, Jo Handelsman
2019	Benefits of sparce tableau over nodal admittance formulation for power flow studies	Byungkwon Park, Michael C. Ferris, Christopher DeMarco
2019	Bilinear Bandits with Low-rank Structure	Kwang-Sung Jun, Rebecca Willett, Stephen Wright, Robert Nowak
2019	Biomaterials with functionally graded stiffness	Bram Siemers, Alana Stempien, Rachel Craven, Brett Napiwocki, Wendy Crone
2019	Blended conditional gradients: the unconditioning of conditional gradients	Gábor Braun, Sebastian Pokutta, Dan Tu, Stephen Wright
2019	Chemical ecosystem selection on mineral surfaces reveals long-term dynamics consistent with the spontaneous emergence of mutual catalysis	Lena Vincent, Michael Berg, Mitchell Krismer, Samuel T Saghafi, Jacob Cosby, Talia Sankari, Kalin Vetsigian, H James Cleaves II, David A Baum
2019	Cognitive tast analysis for implicit knowledge about visual representations with similarity learning methods	Blake Mason, Martina A Rau, Robert Nowak
2019	Complexity of proximal augmented lagrangian for nonconvex optimization with nonlinear equity constraints	Yue Xie, Stephen J. Wright
2019	Computing estimators of Dantzig selector type via column adn constraint generation	Rahul Mazumder, Stephen Wright, Andrew Zheng
2019	Concentration inequalities for the empirical distribution of discrete distributions: beyond the method of types	Jay Mardia, Jiantao Jiao, Ervin Tánczos, Robert D Nowak, Tsachy Weissman
2019	Convergence and margin of adversarial training on separable data	Zachary Charles, Shashank Rajput, Stephen Wright, Dimitris Papailiopoulos
2019	Coordinated removal of repressive epigenetic modifications during induced reversal of cell identity	Khoa A Tran, Caleb M Dillingham, Rupa Sridharan
2019	Crepe cellulose paper and nitrocellulose membrane-based triboelectric nanogenerators for energy harvesting and self-powered human-machine interaction	Sheng Chen, Jingxian Jiang, Feng Xu, Shaoqin Gong
2019	CRISPR/Cas9 editing of APP C-terminus attenuates $\beta$-cleavage and promotes $\alpha$-cleavage	Jichao Sun, Jared Carlson-Stevermer, Utpal Das, Minjie Shen, Marion Delenclos, Amanda M. Snead, So Yeon Koo, Lina Wang, Dianhua Qiao, Jonathan Loi, Andrew J. Petersen, Michael Stockton, Anita Bhattacharyya, Mathew V. Jones, Xinyu Zhao, Pamela J. McLean, Andrew A. Sproul, Krishanu Saha, Subhojit Roy
2019	Data-driven phenotype discovery of FMR1 premutation carriers in a population-based sample	Arezoo Movaghar, David Page, Murray Brilliant, Mei Wang Baker, Jan Greenberg, Jinkuk Hong, Leann Smith DaWalt, Krishanu Saha, Finn Kuusisto, Ron Stewart, Elizabeth Berry-Kravis, Marsha R. Mailick
2019	Defining reprogramming checkpoints from single-cell analysis of induced pluripotency	Khoa A Tran, Stefan J Pietrzak, Nur Zafirah Zaidan, Alireza Siahpirani, Sunnie Grace McCalla, Gopal Iyer, Sushmita Roy, Rupa Sridharan
2019	Democratic governance of human germline genome editing	Sheila Jasanoff, J. Benjamin Hurlbut, Krishanu Saha
2019	Development of an in situ cancer vaccine via combinational radiation and bacterial-membrane-coated nanoparticles	Ravi B Patel, Mingzhou Ye, Peter M Carlson, Abigail Jaquish, Luke Zangl, Ben Ma, Yuyuan Wang, Ian Arthur, Ruosen Xie, Ryan J Brown, Xing Wang, Raghava Sriramaneni, KyungMann Kim, Shaoqin Gong, Zachary S Morris
2019	Direct synthesis of iterative algorithms with bounds on achievable worst-case convergence rate	Laurent Lessard, Peter Seiler
2019	Distributed optimization of nonconvex functions over time-varying graphs	Bryan Van Scoy, Laurent Lessard
2019	Double-network nanogel as a nonviral vector for DNA delivery	Mingzhou Ye, Yuyuan Wang, Yi Zhao, Ruosen Xie, Nisakorn Yodsanit, Kadina Johnston, Shaoqin Gong
2019	Drug loaded adipocytes: sugar-coated bullets for cancer	Mingzhou Ye, Shaoqin Gong
2019	Dual super-amphiphilic modified cellulose acetate nanofiber membranes with highly efficient oil/water separation and excellent antifouling properties	Weiwen Wang, Jixin Lin, Jiaqi Cheng, Zhixiang Cui, Junhui Si, Qianting Wang, Xiangfang Peng, Lih-Sheng Turng
2019	Economic and environmetnal impacts of a carbon adder in New York	Gökçe Akin-Olçum, Christoph Böhringer, Thomas Rutherford, Andrew Schreiber
2019	Effect of centerline distance on mixing of a Non-Newtonian fluid in a cavity with asymmetric rotors	Baiping Xu, Yao Liu, Liang He, Lih-Sheng Turng, Chuntai Liu
2019	Efficient convex optimization for linear MPC	Stephen J Wright
2019	Efficient optimization of natural resonance theory weightings and bond orders by gram-based convex programming	Eric D Glendening, Stephen J Wright, Frank Weinhold
2019	Electrospun nanofibrous thermoplastic polyurethane/poly (glycerol sebacate) hybrid scaffolds for vocal fold tissue engineering applications	Lin Jiang, Yongchao Jiang, Jeanna Stiadle, Xiaofeng Wang, Lixia Wang, Qian Li, Changyu Shen, Susan L Thibeault, Lih-Sheng Turng
2019	Enhanced performance of an expanded polytetrafluoroethylene-based triboelectric nanogenerator for energy harvesting	Zhi Zhang, Yiyang Xu, Dongfang Wang, Huaguang Yang, Jiansheng Guo, Lih-Sheng Turng
2019	Epigenetic priming of human pluriponent stem cell-derived cardiac progenitor cells accelerates cardiomyocyte maturation	Mitch Biermann, Wenxuan Cai, Di Lang, Jack Hermsen, Luko Profio, Ying Zhou, Andras Czirok, Dona G Isai, Brett N Napiwocki, Adriana M Rodriguez, Matthew E Brown, Marites T Woon, Annie Shao, Tianxiao Han, Donglim Park, Timothy A Hacker, Wendy C Crone, William J Burlingham, Alexey V Glukhov, Ying Ge, Timothy J Kamp
2019	Estimating color-concept associations from image statistics	Ragini Rathore, Zachary Leggon, Laurent Lessard, Karen B. Schloss
2019	Estimating trunk angles during lifting using computer vision bounding boxes	Runyu L Greene, Ming-Lun Lu, Menekse Salar Barim, Xuan Wang, Marie Hayden, Yu Hen Hu, Robert G Radwin
2019	Explicit agent-level optimal cooperative controllers for dynamically decoupled systems with output feedback	Mruganka Kashyap, Laurent Lessard
2019	Fabrication and modification of wavy multicomponent vascular grafts with biomimetic mechanical properties, antithrombogenicity, and enhanced endothelial cell affinity	Hao-Yang Mi, Xin Jing, Zhu-Tong Li, Yu-Jyun Lin, James A Thomson, Lih-Sheng Turng
2019	Fabrication of poly(lactic acid)/silkworm excrement composite with enhanced crystallization, toughness and biodegradation properties	Qi-Hong Liao, Xiangfang Peng, Hui Fang, Lih-Sheng Turng, Chao Chan Chang
2019	Fabrication of triple-layered vascular grafts composed of silk fibers, polyacrylamide hydrogel, and polyurethane nanofibers with biomimetic mechanical properties	Hao-Yang Mi, Yongchao Jiang, Xin Jing, Eduardo Enriquez, Heng Li, Qian Li, Lih-Sheng Turng
2019	Female surgeons and surgical trainesss tend to under rate technical skills on self-assessment	Brady Miller, David Azari, Rebecca Gerber, Robert Radwin, Brian Le
2019	Fostering collaboration of academia and industry by open source software	David Baum, Pascal Kovacs, Richard Mü: üller
2019	Graph-guided regularization for SWUS seasonal forecasting	Abby Stevens, Rebecca Willett, Antonios Mamalakis, Efi Foufoula-Georgiou, James Randerson, Padhraic Smyth, Stephen Wright
2019	H3K27M induces defective chromatin spread of PRC2-mediated repressive H3K27me2/me3 and is essential for glioma tumorigenesis	Ashot S. Harutyunyan, Brian Krug, Haifen Chen, Simon Papillon-Cavanagh, Michele Zeinieh, Nicolas De Jay, Shriya Deshmukh, Carol C. L. Chen, Jad Belle, Leonie G. Mikael, Dylan M. Marchione, Rui Li, Hamid Nikbakht, Bo Hu, Gael Cagnone, Warren A. Cheung, Abdulshakour Mohammadnia, Denise Bechet, Damien Faury, Melissa K. McConechy, Manav Pathania, Siddhant U. Jain, Benjamin Ellezam, Alexander G. Weil, Alexandre Montpetit, Paolo Salomoni, Tomi Pastinen, Chao Lu, Peter W. Lewis, Benjamin A. Garcia, Claudia L. Kleinman, Nada Jabado, Jacek Majewski
2019	High dietary salt-induced dendritic cell activation underlies microbial dysbiosis-associated hypertension	Jane F. Ferguson, Luul A. Aden, Natália Barbaro, Justin P. Van Beusecum, Liang Xiao, Alan J, Simmons, Cassandra Warden, Lejla Pasic, Lauren E. Himmel, Mary K. Washington, Frank L. Revetta, Shilin Zhao, Shivani Kumaresan, Matthew B. Scholz, Zhengzheng Tang, Guanhua Chen, Muredach P. Reilly, Annet Kirabo
2019	Highly transparent, strechable, and rapid self-healing polyvinyl alcohol/cellulose nanofibril hydrogel sensors for sensitive pressure sensing and human motion detection	Xin Jing, Heng Li, Hao-Yang Mi, Yue-Jun Liu, Pei-Yong Feng, Yi-Min Tan, Lih-Sheng Turng
2019	Histone acetyltransferase 1 links metatobilsm and transcription to cell-cycle progression	John Denu
2019	Histone H3 tail binds a unique sensing pocket in EZH2 to activate the PRC2 methyltransferase	Krupa S. Jani, Siddhant U. Jain, Eva J. Ge, Katharine L. Diehl, Stefan M. Lundgren, Manuel M. Müller, Peter W. Lewis, Tom W. Muir
2019	HOS15 and HDA9 negatively regulate immunity through histone deacetylation of intracellular immune receptor NLR genes in Arabidopsis	Leiyun Yang, Xiangsong Chen, Zhixue Wang, Qi Sun, Anna Hong, Aiqin Zhang, Xuehua Zhong, Jian Hua
2019	How 3D virtual reality stores can shape comsumer purchase decisions: the roles of informativeness and playfulness	Hyo Jeong Kang, Jung-hye Shin, Kevin Ponto
2019	In search of characterizing surgical skill	David Azari, Caprice Greenberg, Carla Pugh, Douglas Wiegmann, Robert Radwin
2019	Inferring regulatory programs governing region specificity of neuroepithelial stem cells during early hindbrain and spinal cord development	Deborah Chasman, Nisha Iyer, Alireza Fotuhi Siahpirani, Maria Estevez Silva, Ethan Lippmann, Brian McIntosh, Mitchell D. Probasco, Peng Jiang, Ron Stewart, James A. Thomson, Randolph S. Ashton, Sushmita Roy
2019	Injection molding of delamination-free ultra-high-molecular-weight polyethylene	Galip Yilmaz, Huaguang Yang, Lih-Sheng Turng
2019	In-situ ultrasonic characterization of microcellular injection molding	Peng Zhao, Yao Zhao, Hrishikesh Kharbas, Jianfeng Zhang, Tong Wu, Weimin Yang, Jianzhong Fu, Lih-Sheng Turng
2019	Integer packing sets form a well-quasi-ordering	Haoran Zhu, Alberto Del Pia, Jess Linderoth
2019	Integral quadratic constraints: exact convergence rates and worst-case trajectories	Brian Van Scoy, Laurent Lessard
2019	Learning nearest neighbor graphs from noisy distance samples	Blake Mason, Ardhendu Tripathy, Robert Nowak
2019	LEGO as language for visual communication	Stuart Flack, Kevin Ponto, Travis Tangen, Karen B. Schloss
2019	Linear bandits with feature feedback	Urvashi Oswal, Aniruddha Bhargava, Robert Nowak
2019	Long-term nitric oxide release for rapid endothelialization in expanded polytetrafluoroethylene small-diameter artificial blood vessel grafts	Dongfang Wang, Yiyang Xu, Lixia Wang, Xiaofeng Wang, Shujie Yan, Galip Yilmaz, Qian Li, Lih-Sheng Turng
2019	MaxGap bandit: adaptive algorithms for approximate ranking	Dumeet Katariya, Ardhendu Tripathy, Robert Nowak
2019	Maximin active learning with data-dependent norms	Mina Karzand, Robert D Nowak
2019	Mechanism of activation for the sirtuin 6 protein deacylase	Mark A Klein, Can Liu, Vyacheslav I Kuznetsov, John B Feltenberger, Weiping Tang, John M Denu
2019	Methods for detecting manipulations in 3D scan data	Kevin Ponto, Simon Smith, Ross Tredinnick
2019	Micro-injection molded, poly(vinyl alcohol)-calcium salt templates for precise customization of 3D hydrogel internal architecture	Jason D McNulty, Carlos Marti-Figueroa, Frank Seipel, Joshua Z Plantz, Thomas Ellingham, Lukas J L Duddleston, Sebastian Goris, Benjamin L Cox, Tim A Osswald, Lih-Sheng Turng, Randolph S Ashton
2019	Micropatterned substrates with physiological stiffness promote cell maturation and Pompe disease phenotype in human induced pluripotent stem cell?derived skeletal myocytes	Nunnapas Jiwlawat, Eileen M Lynch, Brett N Napiwocki, Alana Stempien, Randolph S Ashton, Timothy J Kamp, Wendy C Crone, Masatoshi Suzuki
2019	Mineral surfaces select for longer RNA molecules	Ryo Mizuuchi, Alex Blokhuis, Lena Vincent, Philippe Nghe, Niles Lehman, David Baum
2019	Minimum "Norm" neural networks are splines"	Rahhul Parhi, Robert D. Nowak
2019	MIPLIB 2017: data-driven compilation of the 6th mixed-integer programming library	Ambros Gleixner, Gregor Hendel, Gerald Gamrath, Tobias Achterberg, Michael Bastubbe, Timo Berthold, Philipp Christophel, Kati Jarck, Thorsten Koch, Jeff Linderoth, Marco Lübbecke, Hans D Mittelmann, Derya Ozyurt, Ted K Ralphs, Domenico Salvagnin, Yuji Shinano
2019	Modification od 3-D porous hydroxyapatite/thermoplastic polyurethane composite scaffolds for reinforcing interfacial adhesion by polydopamine surface coating	Zifeng Zheng, Zhixiang Cui, Junhui Si, Shengrui Yu, Qianting Wang, Wenzhe Chen, Lih-Sheng Turng
2019	Nanocapsule delivery system for ribonucleoproteins	Shaoqin Gong, Amr Abdeen, Krishanu Saha, Ghojun Chen, Yuyuan Wang, Ruosen Xie
2019	Non?linear rheological response as a tool for assessing dispersion in polypropylene/polycaprolactone/clay nanocomposites and blends made with sub?critical gas?assisted processing	Thomas Ellingham, Galip Yilmaz, Lih?Sheng Turng
2019	Nonvanishing of hyperelliptic zeta functions over finite fields	Jordan S Ellenberg, Wanlin Li, Mark Shusterman
2019	Obesity-dependent CDK1 signaling stimulates mitochondrial respiration at complex I in pancreatic $\beta$-cells	Trillian Gregg, Sophia M Sdao, Rashpal S Dhillon, Jarred W Rensvold, Sophie L Lewandowski, David J Pagliarini, John M Denu, Matthew J Merrins
2019	On sample average approximation for two-stage stochastic programs without relatively complete recourse	Rui Chen, James Luedtke
2019	On the complexity of binary polynomial optimization over acyclic hypergraphs	Alberto Del Pia, Silvia Di Gregorio
2019	Oxygen-rich polimers as highly effective positive tribomaterials for mechanical energy harvesting	Zhi Zhang, Wenzheng Gong, Zhiqing Bai, Dongfang Wang, Yiyang Xu, Zhutong Li, Jiansheng Guo, Lih-Sheng Turng
2019	Pervasive H3K27 acetylation leads to ERV expression and a therapeutic vulnerability in H3K27M gliomas	BrianKrug, Nicolas De Jay, Ashot S Harutyunyan, Shriya Deshmukh, Dylan M Marchione, Paul Guilhamon, Kelsey C Bertrand, Leonie G Mikael, Melissa K McConechy, Carol C L Chen, Sima Khazaei, Robert F Koncar, Sameer Agnihotri, Damien Faury, Benjamin Ellezam, Alexander G Weil, Josie Ursini-Siegel, Daniel D De Carvalho, Peter B Dirks, Peter W Lewis, Paolo Salomoni, Mathieu Lupien, Cheryl Arrowsmith, Paul F Lasko, Benjamin A Garcia, Claudia L Kleinman, Nada Jabado, Stephen C Mack
2019	PGC-1a integrates a metabolism and growth network linked to caloric restriction	Karl N. Miller, Josef P. Clark, Stephen A. Martin, Porsha R. Howell, Maggie S. Burhans, Spencer A. Haws, Nathan B. Johnson, Timothy W Rhoads, Derek M. Pavelec, Kevin W. Eliceiri, Avtar S. Roopra, James M. Ntambi, John M. Denu, Brian W. Parks, Rozalyn M. Anderson
2019	Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea	Qiyun Zhu, Uyen Mai, Wayne Pfeiffer, Stefan Janssen, Francesco Asnicar, Jon G Sanders, Pedro Belda-Ferre, Gabriel A Al-Ghalith, Evguenia Kopylova, Daniel McDonald, Tomasz Kosciolek, John B Yin, Shi Huang, Nimaichand Salam, Jian-Yu Jiao, Zijun Wu, Zhenjiang Z Xu, Kalen Cantrell, Yimeng Yang, Erfan Sayyari, Maryam Rabiee, James T Morton, Sheila Podell, Dan Knights, Wen-Jun Li, Curtis Huttenhower, Nicola Segata, Larry Smarr, Siavash Mirarab, Rob Knight
2019	Plant parts: processes, structures, or functions?	David Baum
2019	Polyplex delivery system for proteins, nucleic acids and protein/nucleic acid complexes	Shaoqin Gong, Yuyuan Wang, Krishanu Saha, Amr Ashraf Abdeen
2019	Portable self-charging power system via integration of a flexible paper-based triboelectric nanogenerator and supercapacitor	Xingxing Shi, Sheng Chen, Huilong Zhang, Jingxian Jian, Zhenqiang Ma, Shaoqin Gong
2019	Preparation of fast-degrading ply(lactic acid)/soy protein concentrate biocomposite foams via supercritical CO2 foaming	Tong Liu, Xiang?Fang Peng, Hao?Yang Mi, Heng Li, Lih?Sheng Turng, Bai?Ping Xu
2019	Programmed release of multimodal, cross-linked vascular endothelial growth factor and heparin layers on electrospun polycaprolactone vascular grafts	Dongfang Wang, Xiaofeng Wang, Zhi Zhang, Lixia Wang, Xiaomeng Li, Yiyang Xu, Cuihong Ren, Qian Li, Lih-Sheng Turng
2019	Promoting endothelial cell affinity and antithrombogenicity of polytetrafluoroethylene (PTFE) by mussel-inspired modification and RGD/heparin grafting	Lih-Sheng Turng, Hao-Yang Mi

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2011-2019 Publications

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