2011 Publications

2011 publications from our faculty and fellows during their time at WID are listed below. Please see each publication for additional information.

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2011A graph structure to encode bound implications in MINLPNannicini, Giacomo; Belotti, Pietro; Lee, Jon; Linderoth, Jeff; Margot, François; Wäcther, Andreas
2011A novel method for improving the surface quality of microcellular injection molded partsLee, Jungjoo; Turng, Lih-Sheng; Dougherty, Eugene; Gorton, Patrick
2011A probing algorithm for MINLP with failure prediction by SVMNannicini, Giacomo; Belotti, Pietro; Lee, Jon; Linderoth, Jeff; Margot, François; Wächter, Andreas
2011A study of the relationship between the rheo-dielectric effect and the elasticity of viscoelastic materialsPeng, Yiyan; Turng, Lih-Sheng; Li, Haimei; Cui, Zhixiang
2011A theory-based problem-solving approach to recruitment challenges in a large randomized field trialKossman, Susan; Hsieh, Yichuan; Peace, Jane; Valdez, Rupa; Severtson, Lori; Burke, Laura; Brennan, Patricia Flatley
2011Active clustering: robust and efficient hierarchical clustering using adaptively selected similaritiesEriksson, Brian; Dasarathy, Gautam; Singh, Aarti; Nowak, Rob
2011Active ranking in practice: general ranking functions with sample complexity boundsJamieson, Kevin G; Nowak, Robert D
2011Active ranking using pairwise comparisons.Jamieson, Kevin G; Nowak, Robert D
2011Aging and the survival of quiescent and non-quiescent cells in yeast stationary-phase culturesWerner-Washburne, M; Roy, Sushmita; Davidson, George S
2011An update on the scalability limits of the condor batch systemBradley, D; St Clair, T; Farrellee, M; Guo, Z; Livny, M; Sfiligoi, I; Tannenbaum, T
2011Approximate stochastic subgradient estimation training for support vector machinesLee, Sangkyun; Wright, Stephen J
2011Autoacetylation of the histone acetyltransferase Rtt109Albaugh, Brittany N; Arnold, Kevin M; Lee, Susan; Denu, John M
2011Automated video exposure assessment of repetitive motionRadwin, Robert G
2011Automatic optimization for MapReduce programsJahani, Eaman; Cafarella, Michael J; Ré, Christopher
2011Biobased and biodegradable PHBV-based polymer blends and biocomposites: properties and applicationsJavadi, Alireza; Pilla, Srikanth; Gong, Shaoqin; Turng, Lih-Sheng
2011Catalysis and mechanistic insights into sirtuin activationDittenhafer-Reed, Kristin E; Feldman, Jessica L; Denu, John M
2011Causal network inference via group sparse regularizationBolstad, Andrew; Van Veen, Barry D; Nowak, Robert
2011CGLXTouch: a multi-user multi-touch approach for ultra-high-resolution collaborative workspacesPonto, Kevin; Doerr, Kai; Wypych, Tom; Kooker, John; Kuester, Falko
2011Collaborative visual analytics environment for imaging geneticsHe, Zhiyu; Ponto, Kevin; Kuester, Falko
2011Conditions under which suboptimal nonlinear MPC is inherently robustPannocchia, Gabriele; Rawlings, James B; Wright, Stephen J
2011Congestion analysis for global routing via integer programmingShojaei, Hamid; Davoodi, Azadeh; Linderoth, Jeffrey T
2011Convex approaches to model wavelet sparsity patternsRao, Nikhil S; Nowak, Robert D; Wright, Stephen J; Kingsbury, Nick G
2011Cooperative distributed model predictive control for nonlinear systemsStewart, Brett T; Wright, Stephen J; Rawlings, James B
2011Coupled optimization models for planning and operation of power systems on multiple scalesFerris, Michael C
2011cRGD-functionalized, DOX-conjugated, and 64Cu-labeled superparamagnetic iron oxide nanoparticles for targeted anticancer drug delivery and PET/MR imagingYang, Xiaoqiang; Hong, Hao; Grailer, Jamison J; Rowland, Ian J; Javadi, Alireza; Hurley, Samuel A; Xiao, Yuling; Yang, Yunan; Zhang, Yin; Nickles, Robert J; others
2011Deterministic pilot sequences for sparse channel estimation in OFDM systemsApplebaum, Lorne; Bajwa, Waheed U; Calderbank, A Robert; Haupt, Jarvis; Nowak, Robert
2011Dimensionality reduction: beyond the Johnson-Lindenstrauss boundBartal, Yair; Recht, Ben; Schulman, Leonard J
2011Disrupting the reader of histone languageOliver, Samuel S; Denu, John M
2011Distilled sensing: adaptive sampling for sparse detection and estimationHaupt, Jarvis; Castro, Rui M; Nowak, Robert
2011DomainImpute: inferring unseen components in the InternetEriksson, Brian; Barford, Paul; Sommers, Joel; Nowak, Robert
2011Dynamic interplay between histone H3 modifications and protein interpreters: emerging evidence for a ôhistone languageöOliver, Samuel S; Denu, John M
2011Dynamic rheological behavior and morphology of polylactide/poly (butylenes adipate-co-terephthalate) blends with various composition ratiosLi, Ke; Peng, Jun; Turng, Lih-Sheng; Huang, Han-Xiong
2011Effects of nanoclay on the morphology and physical properties of solid and microcellular injection molded polyactide/poly (butylenes adipate-co-terephthalate)(PLA/PBAT) nanocomposites and blendsLi, Ke; Cui, Zhixiang; Sun, Xiaofei; Turng, Lih-Sheng; Huang, Hanxiong
2011Empirical comparison of full-waveform lidar algorithmsParrish, Christopher E; Jeong, Inseong; Nowak, Robert D; Smith, R Brent
2011Felix: scaling inference for markov logic with an operator-based approachNiu, Feng; Zhang, Ce; Ré, Christopher; Shavlik, Jude
2011Felix: scaling up global statistical information extraction using an operator-based approachNiu, Feng; Zhang, Ce; Ré, Christopher; Shavlik, Jude
2011Fracture behavior and optical properties of melt compounded semi-transparent polycarbonate (PC)/alumina nanocompositesChandra, Alexander; Turng, Lih-Sheng; Li, Ke; Huang, Han-Xiong
2011Games and simulations in distance learning: the AIDLET modelBidarra, José; Rothschild, Meagan; Squire, Kurt
2011Games for participatory science: a paradigm for game-based learning for promoting science literacy.Shapiro, R Benjamin; Squire, Kurt D
2011Games+ Learning+ Society (GLS) Conference 7.0Steinkuehler, Constance; Martin, Crystle; Ochsner, Amanda
2011Gdxmrw: interfacing gams and matlabFerris, Michael C; Jain, Rishabh; Dirkse, Steven
2011GRIP: global routing via integer programmingWu, Tai-Hsuan; Davoodi, Azadeh; Linderoth, Jeffrey T
2011Handling missing and corrupted data in high-dimensional inferenceBalzano, Laura; Nowak, Robert D
2011Hogwild: a lock-free approach to parallelizing stochastic gradient descentRecht, Benjamin; Re, Christopher; Wright, Stephen; Niu, Feng
2011Hydrolysis of O-acetyl-ADP-ribose isomers by ADP-ribosylhydrolase 3Kasamatsu, Atsushi; Nakao, Motoyuki; Smith, Brian C; Comstock, Lindsay R; Ono, Tohru; Kato, Jiro; Denu, John M; Moss, Joel
2011Identification of macrodomain proteins as novel O-acetyl-ADP-ribose deacetylasesChen, Dawei; Vollmar, Melanie; Rossi, Marianna N; Phillips, Claire; Kraehenbuehl, Rolf; Slade, Dea; Mehrotra, Pawan V; von Delft, Frank; Crosthwaite, Susan K; Gileadi, Opher; others
2011Identifying activityLewis, Adrian S; Wright, Stephen J
2011Incrementally maintaining classification using an RDBMSKoc, M Levent; Ré, Christopher
2011Inferring unseen components of the internet coreEriksson, Brian; Barford, Paul; Sommers, Joel; Nowak, Robert
2011Information literacy and online reading comprehension: two interconnected practicesMartin, Crystle; Steinkuehler, Constance
2011Inherently robust suboptimal nonlinear MPC: theory and applicationPannocchia, Gabriele; Rawlings, James B; Wright, Stephen J
2011Interactive image fusion in distributed visualization environmentsYamaoka, So; Ponto, Kevin; Doerr, K-U; Kuester, Falko
2011Introduction to the issue on adaptive sparse representation of data and applications in signal and image processingStarck, J-L; Fadili, Jalal; Elad, Michael; Nowak, Robert; Tsakalides, Panagiotis
2011IPP special issue on "Injection Molding and Molds"Titomanlio, Giuseppe; Turng, Lih-Sheng; Ito, Hiroshi; Vincent, Michel
2011Is suboptimal nonlinear MPC inherently robust?Pannocchia, Gabriele; Rawlings, James B; Wright, Stephen J
2011KAT (ching) metabolism by the tail: insight into the links between lysine acetyltransferases and metabolismAlbaugh, Brittany N; Arnold, Kevin M; Denu, John M
2011Let me know when she stops talking: using games for learning without colonizing playSteinkuehler, Constance; King, Elizabeth; Alagoz, Esra; Anton, Gabriella; Chu, Sarah; Elmergreen, Jonathan; Fahser-Herro, Danielle; Harris, Shannon; Martin, Crystle; Ochsner, Amanda; others
2011Low-dimensional embedding using adaptively selected ordinal dataJamieson, Kevin G; Nowak, Robert D
2011Mechanical Interactions of Mouse Mammary Gland Cells with a Three-Dimensional Matrix ConstructLopez-Garcia, M d C; Beebe, DJ; Crone, WC
2011Mediator coordinates PIC assembly with recruitment of CHD1Lin, Justin J; Lehmann, Lynn W; Bonora, Giancarlo; Sridharan, Rupa; Vashisht, Ajay A; Tran, Nancy; Plath, Kathrin; Wohlschlegel, James A; Carey, Michael
2011Microcellular poly (hydroxybutyrate-co-hydroxyvalerate)-hyperbranched polymer--nanoclay nanocompositesJavadi, Alireza; Srithep, Yottha; Pilla, Srikanth; Clemons, Craig C; Gong, Shaoqin; Turng, Lih-Sheng
2011Mixed methods to study games and learningSteinkuehler, Constance; King, Elizabeth; Martin, Crystle; Oh, Yoonsin; Chu, Sarah; Williams, Caroline; Ochsner, Amanda; Harris, Shannon; Owen, V Elizabeth; Anton, Gabriella; others
2011Novel foam injection molding technology using carbon dioxide-laden pelletsLee, Jungjoo; Turng, Lih-Sheng; Dougherty, Eugene; Gorton, Patrick
2011Nucleation catalysis in aluminum alloy A356 using nanoscale inoculantsDe Cicco, Michael P; Turng, Lih-Sheng; Li, Xiaochun; Perepezko, John H
2011Nucleation catalysis potency of ceramic nanoparticles in aluminum matrix nanocompositesDe Cicco, Michael P; Perepezko, John H; Turng, Lih-Sheng; Li, Xiaochun
2011On the limits of sequential testing in high dimensionsMalloy, Matt; Nowak, Robert
2011On the success of network inference using a markov routing modelBalzano, Laura; Nowak, Robert; Roughan, Matthew
2011Online research in older adults: lessons learned from conducting an online randomized controlled trialNahm, Eun-Shim; Bausell, Barker; Resnick, Barbara; Covington, Barbara; Brennan, Patricia F; Mathews, Rekha; Park, Joon Ho
2011Optimal response to attacks on the open science gridAltunay, Mine; Leyffer, Sven; Linderoth, Jeffrey T; Xie, Zhen
2011Optimization under nonconvexity and uncertainty: algorithms and softwareLinderoth, Jeff
2011Orbital branchingOstrowski, James; Linderoth, Jeff; Rossi, Fabrizio; Smriglio, Stefano
2011Orphan macrodomain protein (human C6orf130) is an O-Acyl-ADP-ribose deacylase solution structure and catalytic propertiesPeterson, Francis C; Chen, Dawei; Lytle, Betsy L; Rossi, Marianna N; Ahel, Ivan; Denu, John M; Volkman, Brian F
2011Partial enumeration MPC: robust stability results and application to an unstable CSTRPannocchia, Gabriele; Wright, Stephen J; Rawlings, James B
2011Plant homeodomain (PHD) fingers of CHD4 are histone H3-binding modules with preference for unmodified H3K4 and methylated H3K9Mansfield, Robyn E; Musselman, Catherine A; Kwan, Ann H; Oliver, Samuel S; Garske, Adam L; Davrazou, Foteini; Denu, John M; Kutateladze, Tatiana G; Mackay, Joel P
2011Polymer Blends and Biocomposites: Properties and ApplicationsIavadim, Alireza; Pilla, Srikanth; Gong, Shaoqin; Turng, Lih-Sheng
2011Polyurethane/dermatan sulfate copolymers as hemocompatible, non-biofouling materialsXu, Fangmin; Flanagan, Claire E; Ruiz, Amaliris; Crone, Wendy C; Masters, Kristyn S
2011Posit: an adaptive framework for lightweight ip geolocationEriksson, Brian; Barford, Paul; Maggs, Bruce; Nowak, Robert
2011Probabilistic databasesSuciu, Dan; Olteanu, Dan; Ré, Christopher; Koch, Christoph
2011Probabilistic management of OCR data using an RDBMSKumar, Arun; Ré, Christopher
2011Probability of unique integer solution to a system of linear equationsMangasarian, Olvi L; Recht, Benjamin
2011Processing and characterization of recycled poly (ethylene terephthalate) blends with chain extenders, thermoplastic elastomer, and/or poly (butylene adipate-co-terephthalate)Srithep, Yottha; Javadi, Alireza; Pilla, Srikanth; Turng, Lih-Sheng; Gong, Shaoqin; Clemons, Craig; Peng, Jun
2011Processing mechanism and substrate selectivity of the core NuA4 histone acetyltransferase complexArnold, Kevin M; Lee, Susan; Denu, John M
2011Queries and materialized views on probabilistic databasesDalvi, Nilesh; Re, Christopher; Suciu, Dan
2011Scaling inference for Markov Logic with a task-decomposition approachNiu, Feng; Zhang, Ce; Ré, Christopher; Shavlik, Jude
2011Searching for the fun in learningGames, Alex; Squire, Kurt D
2011Sensitive electrochemical immunosensor for the detection of cancer biomarker using quantum dot functionalized graphene sheets as labelsYang, Minghui; Javadi, Alireza; Gong, Shaoqin
2011Sequential analysis in high-dimensional multiple testing and sparse recoveryMalloy, Matthew; Nowak, Robert
2011Sirt3 promotes the urea cycle and fatty acid oxidation during dietary restrictionHallows, William C; Yu, Wei; Smith, Brian C; Devires, Mark K; Ellinger, James J; Someya, Shinichi; Shortreed, Michael R; Prolla, Tomas; Markley, John L; Smith, Lloyd M; others
2011Solving large Steiner triple covering problemsOstrowski, James; Linderoth, Jeff; Rossi, Fabrizio; Smriglio, Stefano
2011Sparse optimizationWright, Stephen J
2011Störung von histon-ablesernOliver, Samuel S; Denu, John M
2011Strong branching inequalities for convex mixed integer nonlinear programsKılınç, Mustafa; Linderoth, Jeff; Luedtke, James; Miller, Andrew
2011Structural and kinetic isotope effect studies of nicotinamidase (Pnc1) from Saccharomyces cerevisiaeSmith, Brian C; Anderson, Mark A; Hoadley, Kelly A; Keck, James L; Cleland, W Wallace; Denu, John M
2011Structure and biochemical functions of SIRT6Pan, Patricia W; Feldman, Jessica L; Devries, Mark K; Dong, Aiping; Edwards, Aled M; Denu, John M
2011Study of microcellular injection molding with expandable thermoplastic microspherePeng, J; Yu, E; Sun, X; Turng, L-S; Peng, X-F
2011System for inspection of large high-resolution radiography datasetsWypych, Tom; Yamaoka, So; Ponto, Kevin; Kuester, Falko
2011Tensor completion and low-n-rank tensor recovery via convex optimizationGandy, Silvia; Recht, Benjamin; Yamada, Isao
2011The effect of polymer additives on surface quality of microcellular injection molded partsLee, J; Turng, L-S; Peng, J; Dougherty, E; Gorton, P
2011The geometry of generalized binary searchNowak, Robert D
2011Tight measurement bounds for exact recovery of structured sparse signalsRao, Nikhil; Recht, Benjamin; Nowak, Robert
2011Translation from the quantified implicit process flow abstraction in SBGN-PD diagrams to bio-PEPA illustrated on the cholesterol pathway.Loewe, Laurence; Guerriero, Maria Luisa; Watterson, Steven; Moodie, Stuart L; Ghazal, Peter; Hillston, Jane
2011Tuffy: scaling up statistical inference in markov logic networks using an rdbmsNiu, Feng; Ré, Christopher; Doan, AnHai; Shavlik, Jude
2011User manual of Felix 0.2Niu, Feng; Ré, Christopher; Shavlik, Jude; Slauson, Josh; Zhang, Ce
2011User manual of Tuffy 0.3Doan, A; Niu, Feng; Ré, Christopher; Shavlik, Jude; Zhang, Ce
2011Valid inequalities for the pooling problem with binary variablesD'Ambrosio, Claudia; Linderoth, Jeff; Luedtke, James
2011Video games and learning: teaching and participatory culture in the digital ageSquire, Kurt
2011Viscoelastic properties of blood studied through piezoresistance measurementsPeng, Yiyan; Turng, Lih-Sheng; Cui, Zhixiang; Woodson, Robert D; Li, Haimei; Wang, Xiaofeng
2011Web platforms to conduct theory-based randomized controlled trials for older adultsNahm, E; Resnick, B; Magaziner, J; Brennan, P; Bellantoni, M; Rietschel, M; Covington, B; Brown, J