| 2022 | A better way to decay: Proximal gradient training algorithms for neural nets | Liu Yang, Jifan Zhang, Joseph Shenouda, Dimitris Papailiopoulos, Kangwook Lee, Robert D. Nowak | Preprint |
| 2022 | A graphical model for fusing diverse microbiome data | Mehmet Aktukmak, Haonon Zhu, Marc Chevrette, Julia Nepper, Shruthi Magesh, Jo Handelsman, Alfred Hero | Preprint |
| 2022 | A perturbation bound on the subspace estimator from canonical projections | Karan Srivastava, Daniel Pimentel-Alarcón | Preprint |
| 2022 | A review of current advancements in high surface quality injection molding: Measurement, influencing factors, prediction, and control | Jinsu Gim, Lih-Sheng Turng | Article |
| 2022 | ACEs in spaces: Autocatalytic chemical ecosystems in spatial settings | Alex M. Plum, David A. Baum | Preprint |
| 2022 | Achieving STEM diversity: Fix the classrooms | Jo Handelsman, Sarah Elgin, Mica Estrada Shan Hays, Tracy Johnson, Sarah Miller, Vida Mingo, Christopher Shaffer, Jason Williams | Article |
| 2022 | Active learning with neural networks: Insights from nonparametric statistics | Yinglun Zhu, Robert Nowak | Preprint |
| 2022 | AJEDI in science: leveraging instructor communities to create antiracist curricula | Sarah Miller, Jennifer E. Kerr, Jo Handelsman | Article |
| 2022 | All-in-one virus-free manufacturing process of allogeneic chimeric antigen receptor (CAR) T cells using CRISPR/CAS9 | SCG Lima, D Cappabianca, MH Forsberg, C Capitini, DT Covas, K Saha, LEB Souza | Article |
| 2022 | An LCO-responsive homolog of NODULE INCEPTION positively regulates lateral root formation in Populus sp. | Thomas B Irving, Sanhita Chakraborty, Lucas Gontijo Silva Maia, Sara Knaack, Daniel Conde, Henry W Schmidt, Paolo M Triozzi, Carl H Simmons, Sushmita Roy, Matias Kirst, Jean-Michel Ané | Article |
| 2022 | An SDP relaxation for the sparse integer least square problem | Alberto Del Pia, Dekun Zhou | Preprint |
| 2022 | Application of quantum machine learning to HEP analysis at LHC using quantum computer simulators and quantum computer hardware | S. L. Wu, J. Chan, A. Cheng, W. Guan, S. J. Sun, R. Zhang, C. Zhou, M. Livny, A. D. Meglio, A. C. Y. Li, J. Lykken, P. Spentzouris, S. Y.-C. Chen, S. Yoo, T.-C. Wei, P. Lougovski, S. Padhi, S. Severini, D. Walker | Proceeding |
| 2022 | Authentic Undergraduate Research in Machine Learning with The Informatics Skunkworks: A Strategy for Scalable Apprenticeship Applied to Materials Informatics Research | Benjamin Afflerbach, Wendy Crone, Dane Morgan, Anne Gillian-Daniel, Nafsaniath Fathema | Proceeding |
| 2022 | BioKlustering: a web app for semi-supervised learning of maximally imbalanced genomic data | Samuel Ozminkowski, Yuke Wu, Liule Yang, Zhiwen Xu, Luke Selberg, Chunrong Huang, Claudia Solís-Lemus | Preprint |
| 2022 | Chernoff Sampling for Active Testing and Extension to Active Regression | Subhojyoti Mukherjee, Ardhendu Tripathy, Robert Nowak | Preprint |
| 2022 | Classification of animal sounds in a hyperdiverse rainforest using convolutional neural networks with data augmentation | Yuren Sun, Tatiana Midori Maeda, Claudia Solís-Lemus, Daniel Pimentel-Alarcón, Zuzana Buřivalová | Article |
| 2022 | Classifying incomplete data with a mixture of subspace experts | Ben A. Kizaric, Daniel L. Pimentel-Alarcón | Proceeding |
| 2022 | Cognitive and cultural factors that affect general vaccination and COVID-19 vaccination attitudes | Alla Keselman, Catherine Arnott-Smith, Amanda J. Wilson, Gondy Leroy, David R. Kaufman | Article |
| 2022 | Color category boundaries predict generalization of color-concept associations | Melissa A. Schoenlein, Karen B. Schloss | Proceeding |
| 2022 | Color-concept associations reveal an abstract conceptual space | Kushin Mukherjee, Karen Schloss, Laurent Lessard, Michael Gleicher, Timothy Rogers | Proceeding |
| 2022 | Colour-concept association formation for novel concepts | Melissa A. Schoenlein, Karen B. Schloss | Article |
| 2022 | Combating online health misinformation: A professional's guide to helping the public | A Keselman, C Arnott-Smith, AJ Wilson | Book |
| 2022 | Cyclic block coordinate descent with variance reduction for composite nonconvex optimization | Xufeng Cai, Chaobing Song, Stephen J. Wright, Jelena Diakonikolas | Preprint |
| 2022 | Detectability of varied hybridization scenarios using genome-scale hybrid detection methods | Marianne Bjorner, Erin K. Molloy, Colin N. Dewey, Claudia Solís-Lemus | Preprint |
| 2022 | Discovery and mechanism of small molecule inhibitors selective for the chromatin-binding domains of oncogenic UHRF1 | Wallace H. Liu, Robert E. Miner III, Brittany N. Albaugh, Gene E. Ananiev, Scott A. Wildman, John M. Denu | Article |
| 2022 | Effect of static mixer on fiber orientation of injection molded fiber-reinforced composites | Demitri Shotwell, Allen Jonathan Román, Huaguang Yang, Chung-Yin Lin, Stefanie Glas, Edward Chen, Tim A. Osswald, Lih-Sheng Turng | Article |
| 2022 | Effective mechanical properties of injection-molded short fiber reinforced PEEK composites using periodic homogenization | Jian Zhao, Chengjie Guo, Xiubin Zuo, Allen Jonathan Román, Yinghao Nie, Dong-Xiao Su, Lih-Sheng Turng, Tim A. Osswald, Gengdong Cheng, Weidong Chen | Article |
| 2022 | Evolutionary genome mining for the discovery and engineering of natural product biosynthesis | Marc G Chevrette, Nelly Selem-Mojica, César Aguilar, Kristin Labby, Edder D Bustos-Diaz, Jo Handelsman, Francisco Barona-Gómez | Article |
| 2022 | Exclusive breast-feeding, the early-life microbiome and immune response, and common childhood respiratory illnesses | Christian Rosas-Salazar, Meghan H. Shilts, Zheng-Zheng Tang, Qilin Hong, Kedir N.Turi, Brittney M.Snyder, Derek A.Wiggins, Christian E. Lynch, Tebeb Gebretsadik, R. Stokes Peebles Jr., Larry J. Anderson, Suman R. Das, Tina V. Hartert | Article |
| 2022 | Flexible lumped microwave passive components and filters on cellulose nanofibril substrates | Shuoyang Qiu, Huilong Zhang, Qiangu Yan, Linda Katehi, Shaoqin Gong, Zhiyong Cai, Zhenqiang Ma | Article |
| 2022 | Fusion subspace clustering for incomplete data | Usman Mahmood, Daniel Pimentel-Alarcón | Preprint |
| 2022 | Genetic diversity of Malagasy baobabs: implications for conservation | Nisa Karimi, Corrinne E. Grover, Joseph P. Gallagher, Justin L. Conover, Emma R. Miller, Johathan F. Wendel, David A. Baum | Preprint |
| 2022 | Geometry of the minimum volume confidence sets | Heguang Lin, Mengze Li, Daniel Pimentel-Alarcón, Matthew L. Malloy | Preprint |
| 2022 | Hierarchical Optimization | Kristin P. Bennett, Michael C. Ferris, Jong-Shi Pang, Mikhail V. Solodov, Stephen J. Wright | Article |
| 2022 | High dimensional stochastic linear contextual bandit with missing covariates | Byoungwook Jang, Julia Nepper, Marc Chevrette, Jo Handelsman, Alfred O. Hero III | Preprint |
| 2022 | Histone acid extraction and high throughput mass spectrometry to profile histone modifications in Arabidopsis thaliana | Ray Scheid, James A. Dowell, Dean Sanders, Jianjun Jiang, John M. Denu, Xuehua Zhong | Article |
| 2022 | Impacts of climate changes on land allocation and land values: An application of the thimble REAP model | Lingxiao Wang, Thomas Rutherford | Proceeding |
| 2022 | Implementing systems thinking and data science in the training of the regenerative medicine workforce | Anne L. Plant, Nicole Piscopo, Krishanu Saha, Claudia Zylberberg, Krishnendu Roy, Katherine Tsokas, Samantha N. Schumm, Sarah H. Beachy | Article |
| 2022 | In situ autofluorescence lifetime assay of a photoreceptor stimulus response in mouse retina and human retinal organoids | Kayvan Samimi, Bikash R. Pattnaik, Elizabeth E. Capowski, Krishanu Saha, David M. Gamm, Melissa C. Skala | Article |
| 2022 | Increased expression of SLC25A1/CIC causes an autistic-like phenotype with altered neuron morphology | Michael J Rigby, Nicola Salvatore Orefice, Alexis J Lawton, Min Ma, Samantha L Shapiro, Sue Y Yi, Inca A Dieterich, Alyssa Frelka, Hannah N Miles, Robert A Pearce, John Paul J Yu, Lingjun Li, John M Denu, Luigi Puglielli | Article |
| 2022 | Learning preference distributions from distance measurements | Gokcan Tatli, Rob Nowak, Ramya Korlakai Vinayak | Proceeding |
| 2022 | Mechanistic basis for maintenance of CHG DNA methylation in plants | Jian Fang, Jianjun Jiang, Sarah M. Leichter, Jie Liu, Mahamaya Biswal, Nelli Khudaverdyan, Xuehua Zhong, Jikui Song | Article |
| 2022 | Metabolomic analysis of carbohydrate and amino acid changes induced by hypoxia in naked mole-rat brain and liver | Hang Cheng, Yiming (Amy) Qin, Rashpal Dhillon, James Dowell, John M. Denu, Matthew E. Pamenter | Article |
| 2022 | Microbiome composition modulates secondary metabolism in a multispecies bacterial community | Marc G. Chevrette, Chris S. Thomas, Amanda Hurley, Natalia Rosario-Meléndez, Kris Sankaran, Yixing Tu, Austin Hall, Shruthi Magesh, Jo Handelsman | Proceeding |
| 2022 | MiNAA: Microbiome network alignment algorithm | Reed Nelson, Rosa Aghdam, Claudia Solís-Lemus | Preprint |
| 2022 | Minimum-length trace reconstruction via integer programming | H. Li, D. Pimentel-Alarcón | Proceeding |
| 2022 | Modular derivation of diverse, regionally discrete human posterior CNS neurons enables discovery of transcriptomic patterns | Nisha R. Iyer, Junha Shin, Stephanie Cuskey, Yucheng Tian, Noah R. Nicol, Tessa E. Doersch, Frank Seipel, Sunnie Grace McCalla, Sushmita Roy, Randolph S. Ashton | Article |
| 2022 | Multifunctional nanoparticle potentiates the in situ vaccination effect of radiation therapy and enhances response to immune checkpoint blockade | Ying Zhang, Raghava N. Sriramaneni, Paul A. Clark, Justin C. Jagodinsky, Mingzhou Ye, Wonjong Jin, Yuyuan Wang, Amber Bates, Caroline P. Kerr, Trang Le, Raad Allawi, Xiuxiu Wang, Ruosen Xie, Thomas C. Havighurst, Ishan Chakravarty, Alexander L. Rakhmilevich, Kathleen A. O'Leary, Linda A. Schuler, Paul M. Sondel, Kyungmann Kim, Shaoqin Gong, Zachary S. Morris | Article |
| 2022 | NAD(H)-loaded nanoparticles for efficient sepsis therapy via modulating immune and vascular homeostasis | Mingzhou Ye, Yi Zhao, Yuyuan Wang, Ruosen Xie, Yao Tong, John-Demian Sauer, Shaoqin Gong | Article |
| 2022 | New classes of facets for complementarity knapsack problems | Alberto Del Pia, Jeff Linderoth, Haoran Zhu | Preprint |
| 2022 | New valid inequalities and formulations for the static joint Chance-constrained Lot-sizing problem | Zeyang Zhang, Chuanhou Gao, James Luedtke | Article |
| 2022 | Oct4:Sox2 binding is essential for establishing but not maintaining active and silent states of dynamically regulated genes in pluripotent cells | Jerry Hung-Hao Lo, Miguel Edwards, Justin Langerman, Rupa Sridharan, Kathrin Plath, Stephen T. Smale | Article |
| 2022 | On continuous-domain inverse problems with sparse superpositions of decaying sinusoids as solutions | Rahul Parhi, Robert D. Nowak | Proceeding |
| 2022 | One for all: Simultaneous metric and preference learning over multiple users | Gregory Canal, Blake Mason, Ramya Korlakai Vinayak, Robert Nowak | Preprint |
| 2022 | Operator inference for non-intrusive model reduction with nonlinear manifolds | Rudy Geelen, Stephen Wright, Karen Wilcox | Preprint |
| 2022 | Opportunities for utilizing consumer grade 3D capture tools for insurance documentation | Kevin Ponto, Ross Tredinnick | Article |
| 2022 | Parent perspectives on sharing pediatric hospitalization clinical notes | Michelle M. Kelly, MD, PhD, Peter L.T. Hoonakker, PhD, Carrie L. Nacht, MPH, Catherine Arnott-Smith, PhD, Shannon M. Dean, MD, MMM, Daniel J. Sklansky, MD, Windy Smith, MSN, RN, CPN, Carley M. Sprackling, Benjamin M. Zellmer, MD, Ryan J. Coller, MD, MPH | Article |
| 2022 | Pelletizing ultra-high molecular weight polyethylene (UHMWPE) powders with a novel tapered die and addition of high density polyethylene (HDPE): Processing, morphology, and properties | Huaguang Yang, Galip Yilmaz, Jing Jiang, Jun Xie, Thomas Langstraat, Raymond Chu, Martin van Es, Priya Garg, Lih-Sheng Turng | Article |
| 2022 | pH-Responsive polymer nanoparticles for efficient delivery of Cas9 ribonucleoprotein with or without donor DNA | Ruosen Xie, Xiuxiu Wang, Yuyuan Wang, Mingzhou Ye, Yi Zhao, Brian S. Yandell, Shaoqin Gong | Article |
| 2022 | Physical shish-kebab modification vs. chemical surface coating on expanded polytetrafluoroethylene vascular grafts for enhanced endothelial cell adhesion | Dongfang Wang, Xueke Yu, Yiyang Xu, Xiaofeng Wang, Haonan Wang, YangZhang, Qian Li, Lih-Sheng Turng | Article |
| 2022 | Potential impacts and challenges of border carbon adjustments | C. Böhringer, C. Fischer, K.E. Rosendahl, T.F. Rutherford, T.F. | Article |
| 2022 | Rank-one Boolean tensor factorization and the multilinear polytope? | Albeto Del Pia, Aida Khajavirad | Preprint |
| 2022 | Relaxations and cutting planes for linear programs with complementarity constraints | Alberto Del Pia, Jeff Linderoth, Haoran Zhu | Preprint |
| 2022 | Renewable electricity capacity planning with uncertainty at multiple scales | Michael C. Ferris, Andy Philipott | Preprint |
| 2022 | Single-nuclei transcriptome analysis of the shoot apex vascular system differentiation in Populus | Daniel Conde, Paolo M. Triozzi, Wendell J. Pereira, Henry W. Schmidt, Kelly M. Balmant, Sara A. Knaack, Arturo Redondo-López, Sushmita Roy, Christopher Dervinis, Matias Kirst | Article |
| 2022 | SLC13A5/NaCT overexpression causes disrupted white matter integrity and an autistic-like phenotype | Michael J. Rigby, Nicola Salvatore Orefice, Alexis J. Lawton, Min Ma, Samantha L. Shapiro, Sue Y. Yi, Inca A. Dieterich, Alyssa Frelka, Hannah N. Miles, Robert A. Pearce, John Paul J. Yu, Lingjun Li, John M. Denu, Luigi Puglielli | Preprint |
| 2022 | Sparse Gaussian chain graphs with the spike-and-slab LASSO: Algorithms and asymptotics | Yunyi Shen, Claudia Solís-Lemus, Sameer K. Deshpande | Preprint |
| 2022 | Special Issue: Global solution of integer, stochastic and nonconvex optimization problems | SS Dey, JR Luedtke, NV Sahinidis | Article |
| 2022 | Squares vs. Maps: effects of configuration on the dark-is-more bias? | Clementine Zimnicki, Karen B. Schloss | Proceeding |
| 2022 | Stochastic dynamic lot-sizing with supplier-driven substitution and service level constraints | Narges Sereshti, Merve Bodur, James R. Luedtke | Preprint |
| 2022 | Structure and mechanism of plant DNA methyltransferases | SM Leichter, J Du, X Zhong | Article |
| 2022 | The autism-associated gene SYNGAP1 regulates human cortical neurogenesis | Giorgia Quadrato, Marcella Birtele, Ashley Del Dosso, Tiantian Xu, Tuan Nguyen, Brent Wilkinson, Jean-Paul Urenda, Gavin Knight, Roger Moore, Ritin Sharma, Patrick Pirrotte, Randolph Ashton, Eric Huang, Marcelo Coba | Preprint |
| 2022 | The hierarchical organization of autocatalytic reaction networks and its relevance to the origin of life | Zhen Peng, Jeff Linderoth, David A. Baum | Article |
| 2022 | The multilinear polytope of beta-acyclic hypergraphs has polynomial extension complexity | Alberto Del Pia, Aida Khajavirad | Preprint |
| 2022 | Thermal, rheological, and mechanical characterization of compression and injection molded ultra-high molecular weight polyethylene, high density polyethylene, and their blends | Huaguang Yang, Galip Yilmaz, Jing Jiang, Thomas Langstraat, Raymond Chu, Martin van Es, Priya Garg, Lih-Sheng Turng | Article |
| 2022 | THOR's Hammer: the antibiotic koreenceine drives gene expression in a model microbial community | Amanda Hurley, Marc G. Chevrette, Natalia Rosario-Meléndez, Jo Handelsman | Article |
| 2022 | Ultrafast learning of 4-node hybridization cycles in phylogenetic networks using algebraic invariants | Zhaoxing Wu, Claudia Solís-Lemus | Other |
| 2022 | Unifying effects of direct and relational associations for visual communication | Melissa A. Schoenlein, Johnny Campos, Kevin J. Lande, Laurent Lessard, Karen B. Schloss | Preprint |
| 2022 | Virus-Free CRISPR CAR T cells induce solid tumor regression | Lauren E. Sarko, Katherine P. Mueller, Nicole J. Piscopo, Matthew H. Forsberg, Louise A. Saraspe, Amritava Das, Brittany Russell, Madeline Smerchansky, Lei Shi, Adeela Ali, Cicera R. Lazzarotto, Shengdar Q. Tsai, Christian M. Capitini, Krishanu Saha | Proceeding |
| 2022 | Virus-like particles: Measures and biological functions | Tara Bhat, Amy Cao, John Yin | Article |
