2012 Publications

2012 publications from our faculty and fellows during their time at WID are listed below. Please see each publication for additional information.

201210 activity theory in the learning technologiesDeVane, Benjamin; Squire, Kurt D
20122 designed culturesSquire, Kurt
20126.047/6.878 lecture 18 regulatory networks: inference, analysis, applicationRoy, Sushmita; Feizi, Soheil
2012A classification of errors in lay comprehension of medical documentsKeselman, Alla; Smith, Catherine Arnott
2012A cross case analysis of two out-of-school programs based on virtual worldsSteinkuehler, Constance; Alagoz, Esra; King, Elizabeth; Martin, Crystle
2012A new microcellular injection molding process for polycarbonate using water as the physical blowing agentPeng, Jun; Turng, Lih-Sheng; Peng, Xiang-Fang
2012A quantitative comet infection assay for influenza virusLindsay, Stephen M; Timm, Andrea; Yin, John
2012A theory-based online hip fracture resource center for caregivers: effects on dyadsNahm, Eun-Shim; Resnick, Barbara; Orwig, Denise; Magaziner, Jay; Bellantoni, Michelle; Sterling, Robert; Brennan, Patricia F
2012Accelerated block-coordinate relaxation for regularized optimizationWright, Stephen J
2012Adaptive sensing for sparse signal recoveryHaupt, Jarvis; Nowak, Robert
2012Algorithms and software for convex mixed integer nonlinear programsBonami, Pierre; Kilinç, Mustafa; Linderoth, Jeff
2012Algorithms for sparse optimization and machine learningWright, Stephen
2012Alterations in cerebrospinal fluid proteins in a presymptomatic primary glioma modelGonçalves, Joana P; Francisco, Alexandre P; Moreau, Yves; Madeira, Sara C; Recht, Benjamin
2012Amplifications of learning: use of mobile media devices among youthSquire, Kurt; Dikkers, Seann
2012Arithmetic Veech sublattices of SL(2,Z)Ellenberg, Jordan S; McReynolds, DB
2012Artificial neural network--based supercritical fluid dosage control for microcellular injection moldingSun, Xiaofei; Turng, Lih-Sheng; Dougherty, Eugene; Gorton, Patrick
2012Astrocytes regulate adult hippocampal neurogenesis through ephrin-B signalingAshton, Randolph S; Conway, Anthony; Pangarkar, Chinmay; Bergen, Jamie; Lim, Kwang-Il; Shah, Priya; Bissell, Mina; Schaffer, David V
2012Big data versus the crowd: looking for relationships in all the right placesZhang, Ce; Niu, Feng; Ré, Christopher; Shavlik, Jude
2012Bivalent recognition of a single nucleosome by the tandem PHD fingers of CHD4 is required for CHD4-mediated repressionMusselman, Catherine A; Ramirez, Julita; Sims, Jennifer K; Mansfield, Robyn E; Oliver, Samuel S; Denu, John M; Mackay, Joel P; Wade, Paul A; Hagman, James; Kutateladze, Tatiana G
2012Bivalent recognition of nucleosomes by the tandem PHD fingers of the CHD4 ATPase is required for CHD4-mediated repressionMusselman, Catherine A; Ramìrez, Julita; Sims, Jennifer K; Mansfield, Robyn E; Oliver, Samuel S; Denu, John M; Mackay, Joel P; Wade, Paul A; Hagman, James; Kutateladze, Tatiana G
2012Building an entity-centric stream filtering test collection for TREC 2012Frank, John R; Kleiman-Weiner, Max; Roberts, Daniel A; Niu, Feng; Zhang, Ce; Ré, Christopher; Soboroff, Ian
2012Characterization of the interfacial adhesion for responsive hydrogels on substratesBenjamin, Chandler; Springmann, John; Chindhy, Shahzad; Crone, Wendy
2012Characterizing patient care in hospital emergency departmentsOzkaynak, Mustafa; Brennan, Patricia Flatley
2012Chemically modified graphene/P (VDF-TrFE-CFE) electroactive polymer nanocomposites with superior electromechanical performanceJavadi, Alireza; Xiao, Yuling; Xu, Wenjin; Gong, Shaoqin
2012Co-delivery of doxorubicin and siRNA using octreotide-conjugated gold nanorods for targeted neuroendocrine cancer therapyXiao, Yuling; Jaskula-Sztul, Renata; Javadi, Alireza; Xu, Wenjin; Eide, Jacob; Dammalapati, Ajitha; Kunnimalaiyaan, Muthusamy; Chen, Herbert; Gong, Shaoqin
2012Combinatorics of cis-regulatory element evolution in stress response modules of ascomycete yeastsGarcìa-González, Aurian; Roy, Sushmita; Konieczka, Jay; Thompson, Dawn; Regev, Aviv
2012Comparisons of microcellular polylactic acid parts injection molded with supercritical nitrogen and expandable thermoplastic microspheres: Surface roughness, tensile properties, and morphologyPeng, Jun; Srithep, Yottha; Wang, Jian; Yu, Emily; Turng, Lih-Sheng; Peng, Xiang-Fang
2012Computerized decision support system and decision quality of nursesFonseca, Lìgia Fahl; Brennan, Patrìcia Flatley
2012Correlated Gaussian designs for compressive imagingRao, Nikhil S; Nowak, Robert D
2012DeepDive: web-scale knowledge-base construction using statistical learning and inference.Niu, Feng; Zhang, Ce; Ré, Christopher; Shavlik, Jude W
2012Deformation and fracture of polymer/metal composites subjected to cold rollingCalcagno, BO; Hart, KR; Springmann, JC; Antoun, GG; Crone, WC
2012Designing consumer health IT to enhance usability among different racial and ethnic groups within the United StatesValdez, Rupa S; Gibbons, M Chris; Siegel, Elliot R; Kukafka, Rita; Brennan, Patricia Flatley
2012Dynamics and processing in finite self-similar networksDeDeo, Simon; Krakauer, David C
2012Effect of material parameters on mechanical properties of biodegradable polymers/nanofibrillated cellulose (NFC) nano compositesSrithep, Yottha; Sabo, Ronald; Clemons, Craig; Turng, Lih-Sheng; Pilla, Srikanth; Peng, Jun
2012Effective replays and summarization of virtual experiencesPonto, Kevin; Kohlmann, Joe; Gleicher, Michael
2012Effects of pressure and supercritical fluid on melt viscosity of LDPE in conventional and microcellular injection moldingHsu, C-L; Turng, L-S; Osswald, TA; Rudolph, N; Dougherty, E; Gorton, P
2012Effects of substrate mechanics on contractility of cardiomyocytes generated from human pluripotent stem cellsHazeltine, Laurie B; Simmons, Chelsey S; Salick, Max R; Lian, Xiaojun; Badur, Mehmet G; Han, Wenqing; Delgado, Stephanie M; Wakatsuki, Tetsuro; Crone, Wendy C; Pruitt, Beth L; others
2012Efficiency and equity implications of alternative instruments to reduce carbon leakageBöhringer, Christoph; Carbone, Jared C; Rutherford, Thomas F
2012Efficient network tomography for internet topology discoveryEriksson, Brian; Dasarathy, Gautam; Barford, Paul; Nowak, Robert
2012Elementary: large-scale knowledge-base construction via machine learning and statistical inferenceNiu, Feng; Zhang, Ce; Ré, Christopher; Shavlik, Jude
2012Envisioning the future of home care: applications of immersive virtual reality.Brennan, Patricia Flatley; Smith, C Arnott; Ponto, Kevin; Radwin, Robert; Kreutz, Kendra
2012Evolution and the mechanisms of decision makingFlack, Jessica; Krakauer, David; Hammerstein, Peter
2012Expander graphs, gonality, and variation of Galois representationsEllenberg, Jordan S; Hall, Chris; Kowalski, Emmanuel; others
2012Extended mathematical programming: competition and stochasticityFerris, Michael C
2012Fabrication and characterization of injection molded poly (ε-caprolactone) and poly (ε-caprolactone)/hydroxyapatite scaffolds for tissue engineeringCui, Zhixiang; Nelson, Brenton; Peng, YiYan; Li, Ke; Pilla, Srikanth; Li, Wan-Ju; Turng, Lih-Sheng; Shen, Changyu
2012Fabrication of tissue engineering scaf-foldsKramschuster, Adam; Turng, Lih-Sheng
2012Factoring nonnegative matrices with linear programsRecht, Ben; Re, Christopher; Tropp, Joel; Bittorf, Victor
2012Fortifying the link between SIRT1, resveratrol, and mitochondrial functionDenu, John M
2012Games, learning, and society: learning and meaning in the digital ageBarab, Sasha; Squire, Kurt; Steinkuehler, Constance
2012General and environmental health as the context for science educationKeselman, Alla; Hundal, Savreen; Smith, Catherine Arnott
2012Gold nanorods conjugated with doxorubicin and cRGD for combined anticancer drug delivery and PET imagingXiao, Yuling; Hong, Hao; Matson, Vyara Z; Javadi, Alireza; Xu, Wenjin; Yang, Yunan; Zhang, Yin; Engle, Jonathan W; Nickles, Robert J; Cai, Weibo; others
2012Green jobs and renewable electricity policies: employment impacts of Ontario's feed-in tariffBöhringer, Christoph; Rivers, Nicholas J; Rutherford, Thomas F; Wigle, Randall
2012Guiding the design of evaluations of innovations in health informatics: a framework and a case study of the SMArt SHARP evaluationRamly, Edmond; Brennan, Patricia Flatley
2012GUSS: solving collections of data related models within GAMSBussieck, Michael R; Ferris, Michael C; Lohmann, Timo
2012High throughput strategy to identify inhibitors of histone-binding domainsWagner, Elise K; Albaugh, Brittany N; Denu, John M
2012High-rank matrix completionEriksson, Brian; Balzano, Laura; Nowak, Robert
2012Holonomic analysis of quasibrittle fracture with nonlinear softeningTin-Loi, F; Ferris, MC
2012How evolutionary systems biology will help understand adaptive landscapes and distributions of mutational effectsLoewe, Laurence
2012Identification and characterization of small molecule inhibitors of a plant homeodomain fingerWagner, Elise K; Nath, Nidhi; Flemming, Rod; Feltenberger, John B; Denu, John M
2012Identification and characterization of small molecules that inhibit binding of the third plant homeodomain finger of JARID1A to histone H3Wagner, Elise Katherine; Flemming, Rod; Nath, Nidhi; Denu, John
2012Introduction to the EMF 29 special issue on the role of border carbon adjustment in unilateral climate policyBöhringer, Christoph; Rutherford, Thomas F; Balistreri, Edward J; Weyant, John
2012IPP special issue on "Advanced Molding and Materials Processing Technology"Chen, Shia-Chung; Lee, L James; Turng, Lih-Sheng
2012Kinetics of virus production from single cellsTimm, Andrea; Yin, John
2012K-subspaces with missing dataBalzano, Laura; Szlam, Arthur; Recht, Benjamin; Nowak, Robert
2012Learning from FukushimaPfotenhauer, Sebastian M; Jones, Christopher F; Saha, Krishanu; Jasanoff, Sheila
2012Linear system identification via atomic norm regularizationShah, Parikshit; Bhaskar, Badri Narayan; Tang, Gongguo; Recht, Benjamin
2012Manifold identification in dual averaging for regularized stochastic online learningLee, Sangkyun; Wright, Stephen J
2012Measuring the stiffness of bacterial cells from growth rates in hydrogels of tunable elasticityTuson, Hannah H; Auer, George K; Renner, Lars D; Hasebe, Mariko; Tropini, Carolina; Salick, Max; Crone, Wendy C; Gopinathan, Ajay; Huang, Kerwyn Casey; Weibel, Douglas B
2012Mental workload during brain--computer interface trainingFelton, Elizabeth A; Williams, Justin C; Vanderheiden, Gregg C; Radwin, Robert G
2012Microbial interaction networks in soil and in silicoVetsigian, Kalin
2012Minimax-optimal bounds for detectors based on estimated prior probabilitiesJiao, Jiantao; Zhang, Lin; Nowak, Robert D
2012Minireview series on sirtuins: from biochemistry to health and diseaseDenu, John M; Gottesfeld, Joel M
2012Molecular characterization of multivalent bioconjugates by size-exclusion chromatography with multiangle laser light scatteringPollock, Jacob F; Ashton, Randolph S; Rode, Nikhil A; Schaffer, David V; Healy, Kevin E
2012Morphology and properties of porous and interconnected poly (ε-caprolactone) matrices using solid and microcellular injection moldingCui, Zhixiang; Zhao, Haibin; Peng, Yiyan; Kaland, Michael; Turng, Lih-Sheng; Shen, Changyu
2012Multifunctional gold nanorods for targeted drug delivery to carcinoidsJaskula-Sztul, R; Xiao, Y; Javadi, A; Eide, J; Xu, W; Kunnimalaiyaan, M; Gong, S; Chen, H
2012Multifunctional unimolecular micelles for cancer-targeted drug delivery and positron emission tomography imagingXiao, Yuling; Hong, Hao; Javadi, Alireza; Engle, Jonathan W; Xu, Wenjin; Yang, Yunan; Zhang, Yin; Barnhart, Todd E; Cai, Weibo; Gong, Shaoqin
2012Multifunctional unimolecular micelles for image-guided drug delivery in cancerHong, Hao; Xiao, Yuling; Zhang, Yin; Javadia, Alireza; Engle, Jonathan; Xu, Wenjin; Yang, Yunan; Barnhart, Todd; Gong, Shaoqin; Cai, Weibo
2012Multiple time-scales and the developmental dynamics of social systemsFlack, Jessica C
2012Multivalent recognition of histone tails by the PHD fingers of CHD5Oliver, Samuel S; Musselman, Catherine A; Srinivasan, Rajini; Svaren, John P; Kutateladze, Tatiana G; Denu, John M
2012Nanofibrillated cellulose (NFC) reinforced polyvinyl alcohol (PVOH) nanocomposites: properties, solubility of carbon dioxide, and foamingSrithep, Yottha; Turng, Lih-Sheng; Sabo, Ronald; Clemons, Craig
2012Near-optimal compressive binary searchMalloy, Matthew L; Nowak, Robert D
2012Observations of daily living: putting the "personal" in personal health recordsBackonja, Uba; Kim, Katherine; Casper, Gail R; Patton, Timothy; Ramly, Edmond; Brennan, Patricia Flatley
2012Online real-time presentation of virtual experiences for external viewersPonto, Kevin; Shin, Hyun Joon; Kohlmann, Joe; Gleicher, Michael
2012Optimizing financial effects of HIE: a multi-party linear programming approachSridhar, Srikrishna; Brennan, Patricia Flatley; Wright, Stephen J; Robinson, Stephen M
2012Optimizing statistical information extraction programs over evolving textChen, Fei; Feng, Xixuan; Re, Christopher; Wang, Min
2012Overview of large scale optimization for discriminative training in speech recognitionKanevsky, Dimitri; Heigold, Georg; Wright, Stephen; Ney, Hermann
2012Perspective reformulation and applicationsGünlük, Oktay; Linderoth, Jeff
2012Posit: a lightweight approach for IP geolocationEriksson, Brian; Barford, Paul; Maggs, Bruce; Nowak, Robert
2012Predictive regulatory models in Drosophila melanogaster by integrative inference of transcriptional networksMarbach, Daniel; Roy, Sushmita; Ay, Ferhat; Meyer, Patrick E; Candeias, Rogerio; Kahveci, Tamer; Bristow, Christopher A; Kellis, Manolis
2012Predictive regulatory models in of transcriptional networksMarbach, Daniel; Roy, Sushmita; Ay, Ferhat; Meyer, PE; Candeias, R; Kahveci, T; Bristow, CA; Kellis, M
2012Processing of poly (hydroxybutyrate-co-hydroxyvalerate)-based bionanocomposite foams using supercritical fluidsJavadi, Alireza; Srithep, Yottha; Clemons, Craig C; Turng, LS; Gong, Shaoqin
2012Quantitative genome re-sequencing defines multiple mutations conferring chloroquine resistance in rodent malariaModrzynska, Katarzyna Kinga; Creasey, Alison; Loewe, Laurence; Cezard, Timothee; Borges, Sofia Trindade; Martinelli, Axel; Rodrigues, Louise; Cravo, Pedro; Blaxter, Mark; Carter, Richard; others
2012Quantitative patterns of stylistic influence in the evolution of literatureHughes, James M; Foti, Nicholas J; Krakauer, David C; Rockmore, Daniel N
2012Query complexity of derivative-free optimizationJamieson, Kevin G; Nowak, Robert D; Recht, Benjamin
2012Quickest search for a rare distributionMalloy, Matthew L; Tang, Gongguo; Nowak, Robert D
2012Random pro-p groups, braid groups, and random tame Galois groupsBoston, Nigel; Ellenberg, Jordan S
2012Recombination modulates how selection affects linked sites in DrosophilaMcGaugh, Suzanne E; Heil, Caiti SS; Manzano-Winkler, Brenda; Loewe, Laurence; Goldstein, Steve; Himmel, Tiffany L; Noor, Mohamed AF
2012Regulation of glycolytic enzyme phosphoglycerate mutase-1 by Sirt1 protein-mediated deacetylationHallows, William C; Yu, Wei; Denu, John M
2012Relaxations for production planning problems with increasing by-productsSridhar, Srikrishna; Linderoth, Jeff; Luedtke, James
2012Robust spatio-temporal signal recovery from noisy counts in social mediaXu, Jun-Ming; Bhargava, Aniruddha; Nowak, Robert; Zhu, Xiaojin
2012Role playing games for scientific citizenshipGaydos, Matthew J; Squire, Kurt D
2012Scaling inference for Markov logic via dual decompositionNiu, Feng; Zhang, Ce; Re, Christopher; Shavlik, Jude
2012Security analysis of smartphone point-of-sale systems.Frisby, WesLee; Moench, Benjamin; Recht, Benjamin; Ristenpart, Thomas
2012Sequential testing for sparse recoveryMalloy, Matthew L; Nowak, Robert
2012Sequentially designed compressed sensingHaupt, Jarvis; Baraniuk, Richard; Castro, Rui; Nowak, Robert
2012Service desk calls in a home-based clinical informatics study: supporting end users in the fieldValdez, RS; Burke, LJ; Casper, GR; Sturgeon, BA; Rosmait, C; Palzkill, D; Hamann, D; Murphy, J; Brennan, PF
2012Services liberalisation in the regions of Russia under WTO accession: regional household and poverty effectsRutherford, Thomas F; Tarr, David G
2012Signal recovery in unions of subspaces with applications to compressive imagingRao, Nikhil; Recht, Benjamin; Nowak, Robert
2012SIRT3 protein deacetylates isocitrate dehydrogenase 2 (IDH2) and regulates mitochondrial redox statusYu, Wei; Dittenhafer-Reed, Kristin E; Denu, John M
2012Sirtuin catalysis and regulationFeldman, Jessica L; Dittenhafer-Reed, Kristin E; Denu, John M
2012Socioscope: spatio-temporal signal recovery from social mediaXu, Jun-Ming; Bhargava, Aniruddha; Nowak, Robert D; Zhu, Xiaojin
2012Some results on the strength of relaxations of multilinear functionsLuedtke, James; Namazifar, Mahdi; Linderoth, Jeff
2012Sparse code of conflict in a primate societyDaniels, Bryan C; Krakauer, David C; Flack, Jessica C
2012Staffing call centers with uncertain demand forecasts: a chance-constrained optimization approach Cd: 120Gurvich, Itai; Luedtke, James; Tezcan, Tolga
2012Subglobal carbon policy and the competitive selection of heterogeneous firmsBalistreri, Edward J; Rutherford, Thomas F
2012Technologies for education and technologies for learners: how information technologies are (and should be) changing schoolsHalverson, Rich; Shapiro, B
2012The convex geometry of linear inverse problemsChandrasekaran, Venkat; Recht, Benjamin; Parrilo, Pablo A; Willsky, Alan S
2012The deacetylase Sirt6 activates the acetyltransferase GCN5 and suppresses hepatic gluconeogenesisDominy, John E; Lee, Yoonjin; Jedrychowski, Mark P; Chim, Helen; Jurczak, Michael J; Camporez, Joao Paulo; Ruan, Hai-Bin; Feldman, Jessica; Pierce, Kerry; Mostoslavsky, Raul; others
2012The evolution of human cooperationGintis, Herbert; Doebeli, Michael; Flack, Jessica
2012The MADlib analytics library: or MAD skills, the SQLHellerstein, Joseph M; Ré, Christoper; Schoppmann, Florian; Wang, Daisy Zhe; Fratkin, Eugene; Gorajek, Aleksander; Ng, Kee Siong; Welton, Caleb; Feng, Xixuan; Li, Kun; others
2012The Open Science Grid--support for multi-disciplinary team science--the adolescent yearsBauerdick, Lothar; Ernst, Michael; Fraser, Dan; Livny, Miron; Pordes, Ruth; Sehgal, Chander; Würthwein, Frank
2012The partitioned LASSO-patternsearch algorithm with application to gene expression dataShi, Weiliang; Wahba, Grace; Irizarry, Rafael A; Bravo, Hector Corrada; Wright, Stephen J
2012The role of border carbon adjustment in unilateral climate policy: insights from a model-comparison studyBöhringer, Christoph; Rutherford, Thomas F; Balistreri, Edward J
2012The role of border carbon adjustment in unilateral climate policy: overview of an Energy Modeling Forum study (EMF 29)Böhringer, Christoph; Balistreri, Edward J; Rutherford, Thomas F
2012Toward a noncommutative arithmetic-geometric mean inequality: conjectures, case-studies, and consequences.Recht, Benjamin; Ré, Christopher
2012Towards a unified architecture for in-RDBMS analyticsFeng, Xixuan; Kumar, Arun; Recht, Benjamin; Ré, Christopher
2012Understanding cardinality estimation using entropy maximizationRé, Christopher; Suciu, Dan
2012Understanding persistent homology and Plex using a networking datasetBalzano, Laura; Ellenberg, Jordan S
2012Unilateral climate policy design: efficiency and equity implications of alternative instruments to reduce carbon leakageBöhringer, Christoph; Carbone, Jared C; Rutherford, Thomas F
2012Universal measurement bounds for structured sparse signal recoveryRao, Nikhil; Recht, Ben; Nowak, Robert
2012Virtual Exertions: a user interface combining visual information, kinesthetics and biofeedback for virtual object manipulationPonto, Kevin; Kimmel, Ryan; Kohlmann, Joe; Bartholomew, Aaron; Radwin, Robert G
2012Web 2.0 literacy and secondary teacher educationFahser-Herro, Danielle; Steinkuehler, Constance
2012What counters antibiotic resistance in nature?Chait, Remy; Vetsigian, Kalin; Kishony, Roy
2012Worst-case optimal join algorithmsNgo, Hung Q; Porat, Ely; Ré, Christopher; Rudra, Atri