2020 Publications

2020 publications from our faculty and fellows during their time at WID are listed below. Please see each publication for additional information.

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2020A comparative analysis of 3D user interaction: how to move virtual objects in mixed realityHyo Jeong Kang, Jung-hye Shin, Kevin PontoProceeding
2020A comprehensive analysis comparing linear and generalized linear models in detecting adaptive SNPsLan Luo, Zheng-zheng Tang, Sean D. Schoville, Jun ZhuArticle
2020A line-search descent algorithm for strict saddle functions with complexity guaranteesMichael O'Neill, Stephen J. WrightPreprint
2020A pH-responsive silica-metal-organic framework hybrid nanoparticle for the delivery of hydrophilic drugs, nucleic acids, and CRISPR-Cas9 genome-editing machineriesYuyuan Wang, Pawan K. Shahi, Ruosen Xie, Huilong Zhang, Amr A.Abdeen, Nisakorn Yodsanit, Zhenqiang Ma, Krishanu Saha, Bikash R. Pattnaik, Shaoqin GongArticle
2020A self-powered and arch-structured triboelectric nanogenerator for portable electronics and human-machine communicationXingxing Shi, Shuidong Zhang, Shaoqin GongArticle
2020A sociotechnical systems approach toward tailored design for personal health information managementNicole E. Werner, Michelle Tong, Dan Nathan-Roberts, Catherine Arnott-Smith, Ross Tredinnick, Kevin Ponto, Marijke Melles, Peter HoonakkerArticle
2020Adapting LIGO workflows to run in the Open Science Grid Edgar Fajardoa, Frank Wuerthweina, Brian Bockelmanb, Miron Livny, Greg Thain, James Alexander Clark, Peter Couvares, Josh WillisPreprint
2020Aligned human cardiac syncytium for in vitro analysis of electrical, structural, and mechanical readoutsB.N. Napiwocki, D. Lang, A. Stempien, J. Zhang, R. Vaidyanathan, J.C. Makielski, L.L. Eckhardt, A.V. Glukhov, T.J. Kamp, W.C. CroneArticle
2020An ecological framework for the analysis of prebiotic chemical reaction networksZhen Peng, Alex M. Plum, Praful Gagrani, David A. BaumArticle
2020An inferred fitness consequence map of the rice genomeZoé Joly-Lopez, Adrian E. Platts, Brad Gulko, Jae Young Choi, Simon C. Groen, Xuehua Zhong, Adam Siepel, Michael D. PuruggananArticle
2020Analysis of biased stochastic gradient descent using sequential semidefinite programsBin Hu, Peter Seiler, Laurent LessardTechnical Report
2020Application of quantum machine learning using the quantum variational classifier method to high energy physics analysis at the LHC on IBM quantum computer simulator and hardware withn10 qubitsSau Lan Wu, Jay Chan, Wen Guan, Shaojun Sun, Alex Wang, Chen Zhou, Miron Livny, Federico Carminati, Alberto Di Meglio, Andy C. Y. Li, Joseph Lykken, Panagiotis Spentzouris, Samuel Yen-Chi Chen, Shinjae Yoo, Tzu-Chieh WeiPreprint
2020Approximating the lagrangian dual of a stochastic integer program via fenchel cuts Rui Chen, James LuedtkePreprint
2020Axial-circular magnetic levitation: a three-dimensional density measurement and manipulation approachChengqian Zhang, Peng Zhao, Fu Gu, Xuechun Zhang, Jun Xie, Yong He, Huamin Zhou, Jianzhong Fu, Lih-Sheng TurngArticle
2020Beta cell dedifferentiation induced by IRE1α deletion prevents type 1 diabetesHugo Lee, Yong-Syu Lee, Quincy Harenda, Stefan Pietrzak, Hülya Zeynep Oktay, Sierra Schreiber, Yian Liao, Shreyash Sonthalia, Ashley E. Ciecko, Yi-Guang Chen, Sunduz Keles, Rupa Sridharan, Feyza EnginArticle
2020Bioengineering tissue morphogenesis and function in human neural organoidsNikolai J. Fedorchak, Nisha Iyer, Randolph S. AshtonArticle
2020Biological and catalytic functions of sirtuin 6 as targets for small-molecule modulatorsMark A. Klein, John M. DenuArticle
2020Biologically functionalized expanded polytetrafluoroethylene blood vessel graftsDongfang Wang, Yiyang Xu, Yu-Jyun Lin, Galip Yilmaz, Jue Zhang, George Schmidt, Qian Li, James A. Thomson, Lih-Sheng TurngArticle
2020Biomimetic fibrin-targeted and H2O2-responsive nanocarriers for thrombus therapyYi Zhao, Ruosen Xie, Nisakorn Yodsanit, Mingzhou Ye, Yuyuan Wang, Shaoqin GongArticle
2020Blue hues don't bring the blues: questioning conventional notions of color-emotion associationsKaren B. Schloss, Christoph Witzel, Leslie Y. Lai Article
2020Breakup of a viscoelastic droplet in co-rotating non-twin screw channelsHuiwen Yu, Baiping Xu, Hongwu Wu, Yaoxue Du, Chuntai Liu, Lih-Sheng TurngArticle
2020BREWing better broader impactsAnne Lynn Gillian-Daniel, Matthew D. Stilwell, Nicholas L. Abbott, Wendy C. CroneTechnical Report
2020Can indicator species guide conservation investments to restore connectivity in Great Lakes tributaries?Kimberly B. Fitzpatrick, Allison T. Moody, Austin Milt, Matthew E. Herbert, Mary Khoury, Eugene Yacobson, Jared A. Ross, Patrick J. Doran, Michael C. Ferris, Peter B. McIntyre, Thomas M. NeesonArticle
2020Characterization of polymer materials using magnetic levitationJun Xie, Peng Zhao, Jianfeng Zhang, Hongwei Zhou, Jianzhong Fu, Lih-Sheng TurngArticle
2020Classification of T-cell activation via autofluorescence lifetime imagingAlex J. Walsh, Katherine P. Mueller, Kelsey Tweed, Isabel Jones, Christine M. Walsh, Nicole J. Piscopo, Natalie M. Niemi, David J. Pagliarini, Krishanu Saha, Melissa C. SkalaArticle
2020Complexity, exactness, and rationality in polynomial optimizationDaniel Bienstock, Alberto Del Pia, Robert HildebrandPreprint
2020Constitutionalism at the nexus of life and lawJ. Benjamin Hurlbut, Sheila Jasanoff, Krishanu SahaArticle
2020Consumer Health Literacy, the National Library of Medicine, and the Public Library: Bridging the GapsCatherine Arnott-Smith, Alla Keselman, Amanda J. Wilson, M. Nichelle MidónArticle
2020Crosslinked polymer nanocapsules for therapeutic, diagnostic, and theranostic applicationsHaotian Sun, William Erdman III, Yuan Yuan, Mohamed Alaa Mohamed, Ruosen Xie, Yuyuan Wang, Shaoqin Gong, Chong ChengArticle
2020Data-driven sample average approximation with covariate informationRohit Kannan, Güzin Bayraksan, James R. LuedtkeArticle
2020Design of efficacious somatic cell genome editing strategies for recessive and polygenic diseasesJared Carlson-Stevermer, Amritava Das, Amr A. Abdeen, David Fiflis, Benjamin Isaac Grindel, Tugce Akcan, Tausif Alam, Heidi Kletzein, Lucille Kohlenberg, Madelyn Goedland, Micah J. Dombroe, Krishanu SahaPreprint
2020Effect of carbonization temperature on mechanical properties and biocompatibility of biochar/ultra-high molecular weight polyethylene compositesSuiyi Li, Yiyang Xu, Xin Jing, Galip Yilmaz, Dagang Li, Lih-Sheng TurngArticle
2020Ethanol-lubricated expanded-polytetrafluoroethylene vascular grafts loaded with eggshell membrane extract and heparin for rapid endothelialization and anticoagulationShujie Yan, Yiyang Xu, Yu-JyunLin, Zhi Zhang, Xiang Zhang, Galip Yilmaz, Qian Li, Lih-Sheng TurngArticle
2020Expanded poly(tetrafluoroethylene) blood vessel grafts with embedded Reactive Oxygen Species (ROS)-responsive antithrombogenic drug for elimination of thrombosisDongfang Wang, Yiyang Xu, Lixia Wang, Xiofeng Wang, Cuihong Ren, Bo Zhang, Qian Li, James A. Thomson, Lih-Sheng TurngArticle
2020Expanded polytetrafluoroethylene/graphite composites for easy water/oil separationRyan Aturaliya, Dongfang Wang, Yi-Yang Xu, Yu-Jyun Lin, Qian Li, Lih-Sheng TurngArticle
2020Exploiting network restricted compute resources with HTCondor: a CMS experiment experienceCarles Acosta-Silva , Antonio Delgado Peris , José Flix Molina, Jaime Frey , José M. Hernández, Miron Livny, Antonio Pérez-Calero Yzquierdo, Todd TannenbaumArticle
2020Exploring the universe from Antarctica - an informal STEM polar research exhibitRoss Tredinnick, Rebecca Cors, James Madsen, David Gagnon, Silvia Bravo-Gallart, Bryce Sprecher, Kevin PontoArticle
2020F?box protein CFK1 interacts with and degrades de novo DNA methyltransferase in ArabidopsisJiani Chen, Jie Liu, Jianjun Jiang, Shuiming Qian, Jingwen Song, Rachel Kabara, Isabel Delo, Giovanna Serino, Fengquan Liu, Zhihua Hua, Xuehua ZhongArticle
2020FEM of gas-assisted injection molding mased on 3D modelXinchao Wang, Tie Geng, Liqun Yan, Yonggang Guo, Lih-Sheng TurngArticle
2020Finding all ε-good arms in stochastic banditsBlake Mason, Lalit Jain, Ardhendu Tripathy, Robert NowakPreprint
2020Flexible and stretchable moicrowave electronics: past, present, and future perspectiveHuilong Zhang, Yu Lan, Shuoyang Qiu, Seunghwan Min, Hokyung Jang, Jeongpil Park, Shaoqin Gong, Zhenqiang MaArticle
2020Fluid-Powered projectile-assisted injection molding: principles and developmentsT.-Q. Kuang, T. Liu, Q. Feng, W.-W Liu, H.-S. Liu, L.-S. TurngArticle
2020Functionalization of 3-D porous thermoplastic polyurethane scaffolds by two-stage polydopamine/hydroxyapatite composite nanoparticlesZ. X. Cui, S. Shen, J. H. Wu, J. H. Si, Q. T. Wang, L-S. Turng, W. Z. ChenArticle
2020Generalized Chernoff sampling for active learning and structured bandit algorithms Subhojyoti Mukherjee, Ardhendu Tripathy, Robert NowakPreprint
2020Genome editing with precision and accuracyKrishanu SahaBook
2020Genome engineering of induced pluripotent stem cells to manufacture natural killer cell therapiesKeerthana Shankar, Christian M. Capitini, Krishanu SahaArticle
2020Geometry, inference, complexity, and democracyJordan S. EllenbergPreprint
2020Graph-guided regularized regression of Pacific Ocean climate variables to increase predictive skill of southwestern US winter precipitationAbby Stevens, Rebecca Willett, Antonios Mamalakis, Efi Foufoula-Georgiou, Alejandro Tejedor, James T. Randerson, Padhraic Smyth, Stephen WrightArticle
2020Gut microbiome variation modulates the effects of dietary fiber on host 2 metabolismSofia M. Murga-Garrido, Qilin Hong, Tzu-Wen L. Cross, Evan R. Hutchison, Jessica Han , Sydney P. Thomas, Eugenio I. Vivas, John Denu, Danilo G. Ceschin, Zheng-Zheng Tang, Federico E. ReyPreprint
2020Highly efficient removal of methylene blue dye from an aqueous solution using cellulose acetate nanofibrous membranes modified by polydopamineJiaqi Cheng, Conghua Zhan, Jiahui Wu, Zhixiang Cui, Junhui Si, Qianting Wang, Xiangfang Peng, Lih-Sheng TurngArticle
2020High-resolution interactive immersive renderings of real-world environmentsKevin Ponto, Ross TredinnickArticle
2020HP1υ regulates H3K36 methylation and pluripotency in embryonic stem cellsNur Zafirah Zaidan, Rupa SridharanArticle
2020Integer packing sets form a well-quasi-orderingAlberto Del Pia, Dion Gijswijt, Jeff Linderoth, Haoran ZhuArticle
2020Intelligent setting of process parameters for injection molding based on case-based reasoning for molding featuresShengrui Yu, Tianfeng Zhang, Yun Zhang, Zhigao Huang, Huang Gao, Wen Han, Lih-Sheng Turng, Huamin ZhouArticle
2020Intelligent technologies for polymer injection moldingPeng Zhao, Jianfeng Zhang, Zhengyang Dong, Junye Huang, Hongwei Zhou, Jianzhong Fu, Lih-Sheng TurngArticle
2020KinderMiner Web: a simple web tool for ranking pairwise associations in biomedical applicationsFinn Kuusisto, Daniel Ng, John Steill, Ian Ross, Miron Livny, James Thomson, David Page, Ron StewartPreprint
2020Label-free classification of T cell activationMelissa C. Skala, Alex J. Walsh, Kelsey Tweed, Katie Mueller, Isabel Jones, Steven M. Trier, Krishanu SahaProceeding
2020Lagrangian dual decision rules for multistage stochastic mixed integer programmingMaryam Daryalal, Merve Bodur, James R. LuedtkePreprint
2020Linear programming and community detectionAlberto Del Pia, Aida Khajavirad, Dmitriy KuniskyPreprint
2020Manifold learning and nonlinear homogenizationShi Chen, Qin Li, Jiangfeng Lu , Stephen J. WrightPreprint
2020MaxiMin active learning in overparameterized model classesMina Karzand, Robert D. NowakArticle
2020Measuring visual acuity and stereo accuracy as mediated by immersive displaysAlex Peer, Kevin PontoArticle
2020Metabolism and the epigenome: a dynamic relationshipSpencer A. Haws, Cassandra M. Leech, John M. DenuArticle
2020Methods for controlled induction of singular rosette cytoarchitecture within human pluripotent stem cell-derived neural multicellular assembliesAlireza Aghayee, Randolph AshtonBook
2020Mixed-Integer linear programming for scheduling unconventional oil field developmentAkhilesh Soni, Jeff Linderoth, James Luedtke, Fabian RigterinkArticle
2020Multi-cover inequalities for totally-ordered multiple knapsack setsAlberto Del Pia, Jeff Linderoth, Haoran ZhuPreprint
2020Multi-trait analysis of rare-variant association summary statistics using MTARLan Luo, Judong Shen, Hong Zhang, Aparna Chhibber, Devan V. Mehrotra, Zheng-Zheng TangArticle
2020Multivalent interactions drive nucleosome binding and efficient chromatin deacetylation by SIRT6Wallace H. Liu, Jie Zheng, Jessica L. Feldman, Mark A. Klein, Vyacheslav I. Kuznetsov, Craig L. Peterson, Patrick R. Griffin, John M. DenuArticle
2020Neural networks, ridge splines, and TV regularization in the radon domainRahul Parhi, Robert D. NowakPreprint
2020Nonvanishing of hyperelliptic zeta functions over finite fieldsJordan S. Ellenberg, Wanlin Li, Mark ShustermanArticle
2020On regret with multiple best armsYinglun Zhu, Robert NowakPreprint
2020Optimal confidence regions for the multinomial parameterMatthew L. Malloy, Ardhendu Tripathy, Robert D. NowakPreprint
2020Optimization-based dispatching policies for open-pit miningAmanda Smith, Jeff Linderoth, Jim LuedtkeArticle
2020Orbital conflict: cutting planes for symmetric integer programsJeff Linderoth, José Núñez Ares, Article
2020pH-Responsive rolymer-drug conjugate: an effective strategy to combat the antimicrobial resistanceMingzhou Ye, Yi Zhao, Yuyuan Wang, Nisakorn Yodsanit, Ruosen Xie, Shaoqin GongArticle
2020Piecewise polyhedral formulations for a multilinear termKaarthik Sundar, Harsha Nagarajan, Site Wang, Jeff Linderoth, Russell BentPreprint
2020Poly[(Butyl acrylate)-co-(butyl methacrylate)] as transparent tribopositive material for high-performance hydrogel-based triboelectric nanogeneratorsHao-Yang MiHao-Yang Mi, Xin Jing, Yuyuan Wang, Xingxing Shi, Heng Li, Chuntai Liu, Changyu Shen, Lih-Sheng Turng, and Shaoqin GongArticle
2020Principles, technologies, and time: The translational journey of the HTCondor-CEBrian Bockelman, Miron Livny, Brian Lin, Prancesco PrelzPreprint
2020Proximity in concave integer quadratic programmingAlberto Del Pia, Mingchen MaPreprint
2020Random coordinate Langevin Monte CarloZhiyan Ding, Qin Li, Jianfeng Lu, Stephen J WrightPreprint
2020Random coordinate underdamped Langevin Monte CarloZhiyan Ding, Qin Li, Jianfeng Lu, Stephen J WrightPreprint
2020Recent progress on nanoparticles for argeted aneurysm treatment and imagingNisakorn Yodsanit, Bowen Wang, Yi Zhao, Lian-Wang Guo, K. Craig Kent, Shaoqin GongArticle
2020Residuals-based distributionally robust optimization with covariate information Rohit Kannan, Güzin Bayrakasan, James R. LuedtkePreprint
2020Robust outlier arm identificationYinglun Zhu, Sumeet Katariya, Robert NowakProceeding
2020Self-acetylation at the active site of phosphoenolpyruvate carboxykinase (PCK1) controls enzyme activityPedro Latorre-Muro, Josue Baeza, Ramon Hurtado-Guerrero, Thomas Hicks, Ignacio Delso, Cristina Hernández-Ruiz, Adrian Velazquez-Campoy, Alexis J Lawton, Jesus Angulo, John M. Denu, Jose A CarrodeguasArticle
2020Semantic discriminability for visual communicationKaren B. Schloss, Zachary Leggon, Laurent LessardPreprint
2020Stability analysis of discrete-time linear complementarity systemsArvind U. Raghunathan, Jeffrey T. LinderothPreprint
2020Systematic analysis of distributed optimization algorithms over jointly-connected networksBryan Van Scoy, Laurent LessardPreprint
2020The ceresa class: Tropical, topological, and algebraicDaniel Corey, Jordan Ellenberg, Wanlin LiPreprint
2020The drivers of greenhouse gas emissions intensity improvements in major economies: analysis of trends 1995-2009Madanmohan Ghosh, Deming Luo, Muhammad Shahid Siddiqui, Thomas Rutherford, Yunfa ZhuArticle
2020The effect of micromechanics models on mechanical property predictions for short fiber compositesJian Zhao, Dong-Xiao Su, Jin-ming Yi, Gengdong Cheng, Lih-Sheng Turng, Tim OsswaldArticle
2020The effects of systematic environmental manipulation on gait of older adultsMax Toepfer, Alejandra Padilla, Kevin Ponto, Andrea H Mason, Kristen A PickettArticle
2020The merger that made usDavid A. Baum, Buzz BaumArticle
2020The pegasus workflow management system: Translational computer science in practiceE Deelman, RF daSilva, K Vahi, M Rynce, R Mayani, Ryan Tanaka, Wendy Whitcup, Miron LivnyArticle
2020The relation between color and spatial structure for interpreting colormap data visualizationsShannon C. Sibrel; Ragini Rathore; Laurent Lessard; Karen B. SchlossArticle
2020The role of neural network activation functionsRahul Parhi, Robert D. NowakArticle
2020Thermosensitive polyacrylonitrile/polyethylene oxide/polyacrylonitrile membrane separators for prompt and safer thermal lithium-ion battery shutdownWenzheng Gong, Zhi Zhang, Shuya Wei, Shilun Ruan, Changyu Shen, Lih-Sheng TurngArticle
2020Transitions between biomes are common and directional in Bombacoideae (Malvaceae)Alexander Zizka, Jefferson G. Carvallho-Sobrinho, R. Toby Pennington, Luciano P. Queiroz, Suzana Alcantara, David A. Baum, Christine D. Bacon, Alexandre AntonelliArticle
2020UW Virtual Brain Project: Assessing benefits of VR educationMelissa A. Schoenlein, Nathaniel Miller, Chris Racey, Simon Smith, Ross Treddinick, Chris Castro, Bas Rokers, Karen B. SchlossArticle
2020Variable smoothing for weakly convex composite functionsAxel Böhm, Stephen J. WrightPreprint