Recent Publications

Recent publications from our faculty and fellows during their time at WID are listed below. Please see each publication for additional information.

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2022A perturbation bound on the subspace estimator from canonical projectionsKaran Srivastava, Daniel Pimentel-AlarcónPreprint
2022Achieving STEM diversity: Fix the classroomsJo Handelsman, Sarah Elgin, Mica Estrada Shan Hays, Tracy Johnson, Sarah Miller, Vida Mingo, Christopher Shaffer, Jason WilliamsArticle
2022AJEDI in science: leveraging instructor communities to create antiracist curriculaSarah Miller, Jennifer E. Kerr, Jo HandelsmanArticle
2022An SDP relaxation for the sparse integer least square problemAlberto Del Pia, Dekun ZhouPreprint
2022Application of quantum machine learning to HEP analysis at LHC using quantum computer simulators and quantum computer hardwareS. L. Wu, J. Chan, A. Cheng, W. Guan, S. J. Sun, R. Zhang, C. Zhou, M. Livny, A. D. Meglio, A. C. Y. Li, J. Lykken, P. Spentzouris, S. Y.-C. Chen, S. Yoo, T.-C. Wei, P. Lougovski, S. Padhi, S. Severini, and D. WalkerProceeding
2022Chernoff Sampling for Active Testing and Extension to Active RegressionSubhojyoti Mukherjee, Ardhendu Tripathy, Robert NowakPreprint
2022Discovery and mechanism of small molecule inhibitors selective for the chromatin-binding domains of oncogenic UHRF1Wallace H. Liu, Robert E. Miner III, Brittany N. Albaugh, Gene E. Ananiev, Scott A. Wildman, and John M. DenuArticle
2022Effective mechanical properties of injection-molded short fiber reinforced PEEK composites using periodic homogenizationJian Zhao, Chengjie Guo, Xiubin Zuo, Allen Jonathan Román, Yinghao Nie, Dong-Xiao Su, Lih-Sheng Turng, Tim A. Osswald, Gengdong Cheng, Weidong Chen Article
2022Evolutionary genome mining for the discovery and engineering of natural product biosynthesisMarc G Chevrette, Nelly Selem-Mojica, César Aguilar, Kristin Labby, Edder D Bustos-Diaz, Jo Handelsman, Francisco Barona-GómezArticle
2022Exclusive breast-feeding, the early-life microbiome and immune response, and common childhood respiratory illnessesChristian Rosas-Salazar, Meghan H. Shilts, Zheng-Zheng Tang, Qilin Hong, Kedir N.Turi, Brittney M.Snyder, Derek A.Wiggins, Christian E. Lynch, Tebeb Gebretsadik, R. Stokes Peebles Jr., Larry J. Anderson, Suman R. Das, Tina V. HartertArticle
2022Fusion subspace clustering for incomplete dataUsman Mahmood, Daniel Pimentel-AlarcónPreprint
2022Geometry of the minimum volume confidence setsHeguang Lin, Mengze Li, Daniel Pimentel-Alarcón, Matthew L. MalloyPreprint
2022In situ autofluorescence lifetime assay of a photoreceptor stimulus response in mouse retina and human retinal organoidsKayvan Samimi, Bikash R. Pattnaik, Elizabeth E. Capowski, Krishanu Saha, David M. Gamm, and Melissa C. SkalaArticle
2022Increased expression of SLC25A1/CIC causes an autistic-like phenotype with altered neuron morphologyMichael J Rigby, Nicola Salvatore Orefice, Alexis J Lawton, Min Ma, Samantha L Shapiro, Sue Y Yi, Inca A Dieterich, Alyssa Frelka, Hannah N Miles, Robert A Pearce, John Paul J Yu, Lingjun Li, John M Denu, Luigi PuglielliArticle
2022Mechanistic basis for maintenance of CHG DNA methylation in plantsJian Fang, Jianjun Jiang, Sarah M. Leichter, Jie Liu, Mahamaya Biswal, Nelli Khudaverdyan, Xuehua Zhong, Jikui SongArticle
2022Metabolomic analysis of carbohydrate and amino acid changes induced by hypoxia in naked mole-rat brain and liverHang Cheng, Yiming (Amy) Qin, Rashpal Dhillon, James Dowell, John M. Denu, Matthew E. PamenterArticle
2022NAD(H)-loaded nanoparticles for efficient sepsis therapy via modulating immune and vascular homeostasisMingzhou Ye, Yi Zhao, Yuyuan Wang, Ruosen Xie, Yao Tong, John-Demian Sauer, Shaoqin GongArticle
2022New classes of facets for complementarity knapsack problemsAlberto Del Pia, Jeff Linderoth, Haoran ZhuPreprint
2022New valid inequalities and formulations for the static joint Chance-constrained Lot-sizing problemZeyang Zhang, Chuanhou Gao, James LuedtkeArticle
2022On continuous-domain inverse problems with sparse superpositions of decaying sinusoids as solutionsRahul Parhi, Robert D. NowakProceeding
2022One for all: Simultaneous metric and preference learning over multiple usersGregory Canal, Blake Mason, Ramya Korlakai Vinayak, Robert NowakPreprint
2022Operator inference for non-intrusive model reduction with nonlinear manifoldsRudy Geelen, Stephen Wright, Karen WilcoxPreprint
2022pH-Responsive polymer nanoparticles for efficient delivery of Cas9 ribonucleoprotein with or without donor DNARuosen Xie, Xiuxiu Wang, Yuyuan Wang, Mingzhou Ye, Yi Zhao, Brian S. Yandell, Shaoqin GongArticle
2022Physical shish-kebab modification vs. chemical surface coating on expanded polytetrafluoroethylene vascular grafts for enhanced endothelial cell adhesionDongfang Wang, Xueke Yu, Yiyang Xu, Xiaofeng Wang, Haonan Wang, YangZhang, Qian Li, Lih-Sheng TurngArticle
2022Potential impacts and challenges of border carbon adjustmentsC. Böhringer, C. Fischer, K.E. Rosendahl, T.F. Rutherford, T.F.Article
2022Rank-one Boolean tensor factorization and the multilinear polytope?Albeto Del Pia, Aida KhajaviradPreprint
2022SLC13A5/NaCT overexpression causes disrupted white matter integrity and an autistic-like phenotype Michael J. Rigby, Nicola Salvatore Orefice, Alexis J. Lawton, Min Ma, Samantha L. Shapiro, Sue Y. Yi, Inca A. Dieterich, Alyssa Frelka, Hannah N. Miles, Robert A. Pearce, John Paul J. Yu, Lingjun Li, John M. Denu, Luigi PuglielliPreprint
2022Sparse Gaussian chain graphs with the spike-and-slab LASSO: Algorithms and asymptoticsYunyi Shen, Claudia Solís-Lemus, Sameer K. DeshpandePreprint
2022The autism-associated gene SYNGAP1 regulates human cortical neurogenesisGiorgia Quadrato, Marcella Birtele, Ashley Del Dosso, Tiantian Xu, Tuan Nguyen, Brent Wilkinson, Jean-Paul Urenda, Gavin Knight, Roger Moore, Ritin Sharma, Patrick Pirrotte, Randolph Ashton, Eric Huang, Marcelo CobaPreprint
2022THOR's Hammer: the antibiotic koreenceine drives gene expression in a model microbial communityAmanda Hurley, Marc G. Chevrette, Natalia Rosario-Melendez, Jo HandelsmanArticle
2022Virus-Free CRISPR CAR T cells induce solid tumor regressionLauren E. Sarko, Katherine P. Mueller, Nicole J. Piscopo, Matthew H. Forsberg, Louise A. Saraspe, Amritava Das, Brittany Russell, Madeline Smerchansky, Lei Shi, Adeela Ali, Cicera R. Lazzarotto, Shengdar Q. Tsai, Christian M. Capitini, Krishanu SahaProceeding
2022Virus-like particles: Measures and biological functionsTara Bhat, Amy Cao, John YinArticle